FC925461

Overview
NameFC925461
Unique NameFC925461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   +  SSI DA+AGI+L+  FVKLVSWYDNEWGY  RV+DL+  +AK
Sbjct:  284 TDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  DS SS  DA AGIAL+  FVKLVSWYDNE+GY  RVVDL+V MA  +
Sbjct:  283 DFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMA 148
            +DF  D+ S+I DA AGI LS KFVKLV+WYDNE+GY TRVVDL+  +A
Sbjct:  281 SDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ*LTS 169
            TDF  D+ SSI DA AGI L+  F K+V+WYDNEWGY  RVVDL++ M + + L +
Sbjct:  287 TDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMVQKEQLAA 342          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF  D+ SSI DA+AGIAL+  FVKL+SWYDNE+GY  RVVDL+
Sbjct:  356 TDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLL 400          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  D  S  +DA+AGI LS  FVKLV+WYDNEWGY  RVVDL + +AK
Sbjct:  286 SDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ*LTS 169
            TDF  D+ SSI DA AGI L+  F K+V+WYDNEWGY  RVVDL++ M + + L +
Sbjct:  287 TDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMIQKEQLAA 342          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  D+ SS  DA AGIAL+  FVKL+SWYDNE+GY  RVVDL+V MA  +
Sbjct:  283 DFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 2
Query:   26 SSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            SSI DA+AGI+L+K FVKLVSWYDNEWGY  RV+DLI  +AK
Sbjct:  291 SSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  D+ SS  DA AGIAL+  FVKL+SWYDNE+GY  RVVDL+V MA  +
Sbjct:  272 DFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322          
The following BLAST results are available for this feature:
BLAST of FC925461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
G3P_COLGL3.247e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_CHICK3.247e-1166.67Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P1_KLUMA3.247e-1165.31Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P1_ANASP3.247e-1155.36Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3PT_HUMAN4.241e-1168.89Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PC_CHLRE4.241e-1162.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_ANAVT4.241e-1155.36Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_SPECI5.538e-1162.75Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_SORMA5.538e-1173.81Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_SHEEP5.538e-1162.75Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE23FM1 TF Citrus clementina cDNA clone KN0AAP11YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925461 ID=FC925461; Name=FC925461; organism=Citrus clementina; type=EST; length=457bp
CACCGACTTTGCTCTTGACAGTAGGTCCAGTATCCTTGATGCCCAGGCTG
GTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCCTGGTATGACAAT
GAGTGGGGCTACCGTACTCGTGTGGTGGATTTGATTGTCCCCATGGCGAA
GACCCAGTAACTTACCTCGCGTGGCTTGAGTATGTAACACGCTTAGTTGT
GCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCCCTAAA
TGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTT
TCCAAGACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGA
TTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAACCCACTTATGTTTTGT
TAGCGAGAAAACAATTGTCTATTGGAAACTTGCTTTTATAAAAAAAAAAA
AAAAAAA
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