FC925461

Overview
NameFC925461
Unique NameFC925461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  D+ SS  DA AGIAL+  FVKL+SWYDNE+GY  RVVDL+V MA  +
Sbjct:  283 DFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  D RSSI DA AGIAL+  FVKLV+WYDNE+GY  RV DL+  MA  +
Sbjct:  282 TDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  D+ SS  DA AGIAL+  FVKL+SWYDNE+GY  RVVDL+V MA  +
Sbjct:  283 DFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +D   ++ SSI D +AGI+L+K FVKLVSWYDNEWGY  RV+DL+  +AK
Sbjct:  284 SDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TDF  D+ SSI DA AGI LS +FVKLVSWYDNE+G+  RVVD++  ++K
Sbjct:  282 TDFLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMVELVSK 331          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TDF  D+R+SI DA+AGIAL   F+K+VSWYDNEWGY  +V+++   +AK
Sbjct:  283 TDFRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKVLEMARVVAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  D+ SS  DA AGIAL+  FVKL+SWYDNE+GY  RVVDL+V MA  +
Sbjct:  283 DFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   +  SSI DA+AGI+L+  FVKLVSWYDNEWGY  RV+DLI  +AK
Sbjct:  283 TDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TDF   + SS+ DA+AGI L+ KFVKL+SWYDNE+GY  RV DLI  +AK
Sbjct:  283 TDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  DS SS  DA AGIAL+  FVKL+SWYDNE+GY  RVVDL+  MA  +
Sbjct:  283 DFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMASKE 333          
The following BLAST results are available for this feature:
BLAST of FC925461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
G3P_PIG5.538e-1162.75Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_DANRE5.538e-1163.46Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_BOVIN5.538e-1162.75Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P2_TRIKO5.538e-1160.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P1_CANGA5.538e-1162.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_RALSO7.233e-1158.00Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_MUSPF7.233e-1162.75Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_CRYPA7.233e-1164.00Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P_CRYCU7.233e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CRIGR7.233e-1162.75Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE23FM1 TF Citrus clementina cDNA clone KN0AAP11YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925461 ID=FC925461; Name=FC925461; organism=Citrus clementina; type=EST; length=457bp
CACCGACTTTGCTCTTGACAGTAGGTCCAGTATCCTTGATGCCCAGGCTG
GTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCCTGGTATGACAAT
GAGTGGGGCTACCGTACTCGTGTGGTGGATTTGATTGTCCCCATGGCGAA
GACCCAGTAACTTACCTCGCGTGGCTTGAGTATGTAACACGCTTAGTTGT
GCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCCCTAAA
TGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTT
TCCAAGACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGA
TTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAACCCACTTATGTTTTGT
TAGCGAGAAAACAATTGTCTATTGGAAACTTGCTTTTATAAAAAAAAAAA
AAAAAAA
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