FC925495

Overview
NameFC925495
Unique NameFC925495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_YERPA (Uncharacterized exonuclease xni OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=xni PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 47/150 (31.33%), Postives = 76/150 (50.67%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTR 450
            P PD + Q +  ++ +   + V     PG EADD+  TL V+   AG +V +VS DK + Q+L+P++++       F      M    +++G L P Q  D   L G  +  IPGV G+G   A  L+ +  +LE L Q ++ + E + R
Sbjct:   72 PMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLAATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDY----FQKRWLDMPFVKQEFGVL-PRQLPDYWGLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPECQRR 216          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_PSEHT (Uncharacterized exonuclease xni OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=xni PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 52/173 (30.06%), Postives = 81/173 (46.82%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDL 519
            P P  +   L   KA+I+   + V E    EADD+I TLA ++        +VS DK F   L+  + +       F       +   +++G ++  + V+  +  GDK ++IPGV+GIG   A  L+  + S+E+ L   D       RK L    D  V+SK L  LR D+
Sbjct:   80 PMPQILKDALVQFKAAIEETGIVVFEPINDEADDIIATLANKASHNNISSVIVSTDKGFLPFLNEHIAVYDY----FKKHYLDQDSIKQRFG-VEQKKLVEFWAFAGDKTNDIPGVKGIGTKSAQLLVNNYSSVEDALN--DDALSASLRKKLTENMDMYVISKQLVSLRTDI 245          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: EX53_STRCO (5'-3' exonuclease OS=Streptomyces coelicolor GN=SCO1622 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 52/178 (29.21%), Postives = 90/178 (50.56%), Query Frame = 1
Query:    7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFA---RKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERT---RKALMTFADQAVLSKNLALLRCDLP 522
            PDT+   +  ++A + A+ +  + V G EADDVIGT   R+      V +V+ D+D +Q++  + R +R+      + +  + D A    KYG +  + + D+  L GD +D +PGV GIG+  A +L+ +FG L  +   VD  +   T   RK L        ++  +  +  D+P
Sbjct:   89 PDTLSPQVPVIEAVLDALGIARVGVAGYEADDVIGTYTARATGP---VDIVTGDRDLYQLVDDA-RGVRVLYPVKGVGTLNLVDEAALREKYG-VDGAGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIQAAVDDPKARLTPTQRKRLTEAGPYLAVAPKVVRVAADVP 261          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: EX53_MYCTU (5'-3' exonuclease OS=Mycobacterium tuberculosis GN=Rv2090 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 1
Query:    7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMAS---FGMEDFARKYG---ELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVD 426
            PD +   +  +   + A  + +   PG EADDV+GTLA R  +    V VVS D+D  Q+++     +R+   G  +A    FG  + A +YG       + + ++  L GD +D +PGV G+G+  A  L+ + GSL+ ++   D
Sbjct:   95 PDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAAD 238          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: EX53_BACSU (5'-3' exonuclease OS=Bacillus subtilis GN=ypcP PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 47/172 (27.33%), Postives = 88/172 (51.16%), Query Frame = 1
Query:    7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            P  ++      K +   + +  I   G EADD IGTLA    +    + VV+ D+D  Q+L+  + +  +     +   +  E F  + G + P   +D+ +L+GD +DN PGV+GIG+  A +LI ++ +++ LL+ +  + + +  K     +D   +S+ LA + C +P
Sbjct:   86 PVELIPQFDLAKEAAAELGIMNIGFAGYEADDCIGTLADLFANEA-DITVVTGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEETGVM-PKALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLSLLPKGQQGKIQQGLSD-LEMSRKLAEIHCSVP 254          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_VIBVU (Uncharacterized exonuclease xni OS=Vibrio vulnificus GN=xni PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 41/150 (27.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTR 450
            P P+ ++ GL+ ++ +   + +  +   G EADD++ TLA +    G KV ++S DK + Q+LSP+L++     R +    +  + F  +   +KP Q  D   L G  +  + G+ GIG   A +++++F  +E      D  ++ RT+
Sbjct:   77 PMPEPLLNGLEKIQEAWWQLGIDSLLSEGDEADDLVATLACKVAQHGEKVTIISTDKGYCQLLSPTLQI-----RDYFQHRWLDQPFIEQEFGVKPQQLSDYWGLTGISSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPDLPKKYRTK 221          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_VIBVY (Uncharacterized exonuclease xni OS=Vibrio vulnificus (strain YJ016) GN=xni PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 41/150 (27.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTR 450
            P P+ ++ GL+ ++ +   + +  +   G EADD++ TLA +    G KV ++S DK + Q+LSP+L++     R +    +  + F  +   +KP Q  D   L G  +  + G+ GIG   A +++++F  +E      D  ++ RT+
Sbjct:   77 PMPEPLLNGLEKIQDAWWQLGIDSLLSEGDEADDLVATLACKVAQHGEKVTIISTDKGYCQLLSPTLQI-----RDYFQHRWLDQPFIEQEFGVKPQQLSDYWGLTGISSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPDLPKKYRTK 221          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_PSYIN (Uncharacterized exonuclease xni OS=Psychromonas ingrahamii (strain 37) GN=xni PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 48/173 (27.75%), Postives = 83/173 (47.98%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDL 519
            P P+ + QGL  ++     + +  +     EADD+I  LA +      K  +VS DK F+Q+L+ S++L       +   SF +     +   +   Q  D  ++ G  +  I GVEGIG   A+ L+ ++GSL N+ Q  +    +   K + +    A+L+K L  L+ D+
Sbjct:   80 PIPELLKQGLPAIQEQFFDLGIDSLVTEEDEADDLIACLADKIAKQQQKCIIVSTDKGFYQLLNESIQLY-----DYFQNSFVIRQQVHQKMGISIQQLNDYWAITGISSSAIKGVEGIGSKGALSLLQQYGSLNNIFQQAEDSNNKLLTK-IKSQQSNAILAKQLVTLKTDI 246          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_YERPG (Uncharacterized exonuclease xni OS=Yersinia pestis bv. Antiqua (strain Angola) GN=xni PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLI 384
            P PD + Q +  ++ +   + V     PG EADD+  TL V+   AG +V +VS DK + Q+L+P++++       F      M    +++G L P Q  D   L G  +  IPGV G+G   A  L+
Sbjct:   72 PMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLAATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDY----FQKRWLDMPFVKQEFGVL-PRQLPDYWGLAGISSSKIPGVAGVGAKTATLLL 194          
The following BLAST results are available for this feature:
BLAST of FC925495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
XNI_YERPA4.404e-1331.33Uncharacterized exonuclease xni OS=Yersinia pestis... [more]
XNI_PSEHT4.404e-1330.06Uncharacterized exonuclease xni OS=Pseudoalteromon... [more]
EX53_STRCO7.511e-1329.215'-3' exonuclease OS=Streptomyces coelicolor GN=SC... [more]
EX53_MYCTU9.810e-1330.825'-3' exonuclease OS=Mycobacterium tuberculosis GN... [more]
EX53_BACSU1.673e-1227.335'-3' exonuclease OS=Bacillus subtilis GN=ypcP PE=... [more]
XNI_VIBVU2.185e-1227.33Uncharacterized exonuclease xni OS=Vibrio vulnific... [more]
XNI_VIBVY2.854e-1227.33Uncharacterized exonuclease xni OS=Vibrio vulnific... [more]
XNI_PSYIN1.417e-1127.75Uncharacterized exonuclease xni OS=Psychromonas in... [more]
XNI_YERPG9.182e-1132.03Uncharacterized exonuclease xni OS=Yersinia pestis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ04FM1 TF Citrus clementina cDNA clone KN0AAP3YJ04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925495 ID=FC925495; Name=FC925495; organism=Citrus clementina; type=EST; length=736bp
CCTACACCTGATACTATAGTTCAGGGGCTTCAATATTTGAAAGCATCCAT
CAAGGCTATGTCCGTTAAGGTGATTGAGGTACCTGGTGTGGAAGCTGACG
ATGTGATTGGGACATTGGCTGTGAGGAGTGTTGATGCTGGGTTCAAGGTA
CGAGTTGTCTCCCCAGATAAAGACTTCTTTCAGATTCTCTCGCCTTCATT
ACGTCTTCTACGGATTGCACCCCGTGGATTTGACATGGCTTCATTTGGGA
TGGAGGATTTTGCTAGAAAGTATGGAGAACTGAAACCTTCGCAGTTTGTC
GATGTGATTTCTCTTGTGGGTGACAAAGCTGATAATATTCCAGGAGTTGA
AGGGATTGGAGACGTTCGTGCGGTGCAACTCATTACAAAATTTGGATCGT
TGGAGAATTTGTTGCAATGTGTTGATCAAGTTGAGGAGGAACGTACGAGA
AAGGCGTTGATGACTTTTGCTGATCAAGCTGTTCTAAGCAAGAACTTGGC
ATTACTACGCTGTGATCTTCCGTTCTACATGGTACCATTTACTACTGGAG
ATATTGCATTTGAAAAACCAAAGGATAATGGGGAGAAATTCACAAGCCTG
TTGACTGCCATAAGTGCCTATGCAGAGGGGTTTTCGGCCGATCCAATAAT
AAGGAGAGCCATATATTTGTGGAAAAAACTTGAAGCTCAGTGTTGAAATT
GTCTTACACACTCATACTCAATGAGCTGCCTAACCT
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