FC925495

Overview
NameFC925495
Unique NameFC925495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_PSEAE (DNA polymerase I OS=Pseudomonas aeruginosa GN=polA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 63/178 (35.39%), Postives = 97/178 (54.49%), Query Frame = 1
Query:    7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF-GSLENLLQCVDQVEEERTRKA------LMTFADQAVLSKNLALLRCDL 519
            PD +   ++ L AS++A+ + ++ V GVEADDVIGTLA  S  A   V + + DKD  Q++   + L+         +   ++    K+G + P   +D ++L+GDK DNIPGV G+G+  A+ L+T   G LE L   +D+V E   R A      L    +QA LS  LA ++ D+
Sbjct:   82 PDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLARSSAAADRPVVISTGDKDMAQLVDGHITLVNT----MTGSRLDVDGVKEKFG-VGPELIIDFLALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEENREQAFLSYQLATIKTDV 254          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHEAM (Uncharacterized exonuclease xni OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=xni PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLPFYM 531
            P P+ + +GL  LK  ++ + V  +     EADD+I TLA +    G +  +VS DK   Q++SP +R        F    F +E F  K G ++  Q +D I+L GD  + IPG+ GIG   A +L+  + SL NL   +  +   +  K L    D A LS  LA L+ +LP ++
Sbjct:   74 PMPEALAKGLPALKTKLETLDVHSVNADS-EADDIIATLACKLAATGGEAIIVSTDKGLLQLMSPHIRQWDHFAGQF----FDIEAFEAKLG-IERHQLLDYIALCGDSGNKIPGIPGIGPKSASELLRTYRSLANLYHSLGTLGSRQANK-LREGRDMARLSYKLAKLQTELPLHL 243          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHEPW (Uncharacterized exonuclease xni OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=xni PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 59/174 (33.91%), Postives = 92/174 (52.87%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            P P+ +  GL  +K+ +    +  +E    EADDVI TLA + V  G +  +VS DK F Q+  P+++        F+     +E   +K G ++  QF+D ++L GD  + IPGV GIG   AV+L+  F SL N+   ++QV  ++ +K L      A LS  L  L+ D+P
Sbjct:   74 PMPEALSNGLGDIKSYLAEHHIASLEADS-EADDVIATLATKLVSIGGEAIIVSTDKGFCQLKHPNIKQWD----HFNQTYMTVEAMEQKLG-VEHKQFIDYLALAGDSGNKIPGVPGIGPKSAVELLKIFRSLANIYSSIEQVGSKQAKK-LEAGKHLARLSYKLVQLQLDMP 240          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHELP (Uncharacterized exonuclease xni OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=xni PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            P P+ + Q L  LK  +       I+    EADDVI TLA + V A  +  +VS DK F Q+LSP ++L       F+  +  +ED  R+ G +  SQF+D +++ GD  + IPG+ GIG   A +L+  F +L N+   +D++  ++ +K L      A LS  L  L+ D+P
Sbjct:   74 PMPEALSQALPALKQHLAERGFHSIDAIA-EADDVIATLASKMVQAKGEAIIVSTDKGFTQLLSPQIQLWD----HFNQQAITIEDRERQLG-VDRSQFIDFLAMAGDSGNKIPGIPGIGPKSACELLKTFRTLANVYASLDKIGAKQAKK-LEEGRALARLSYKLVQLQTDIP 240          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_BORBU (DNA polymerase I OS=Borrelia burgdorferi GN=polA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 48/171 (28.07%), Postives = 94/171 (54.97%), Query Frame = 1
Query:    7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDL 519
            PD ++  + ++K  +    + + E+ G EADD++ + A ++    +   ++SPDKD  Q +S  +++L+I    F       E   +K+G +   Q  D +++VGD++DNIPG++GIG   A  L+ +F +L+ +   ++ + ++  R+ L+   + A LS  L  L  +L
Sbjct:   82 PDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSF--IEMDNEYVTKKFG-VNSFQIKDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEIINKKH-RELLIKEKENAFLSYELVSLEENL 248          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHESH (Uncharacterized exonuclease xni OS=Shewanella sediminis (strain HAW-EB3) GN=xni PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 60/174 (34.48%), Postives = 91/174 (52.30%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            P P+ +   L  LK+ +    V  I+    EADDVI TLA + V  G K  +VS DK F Q+  P ++        F+     +E+   K G ++ SQF+D ++L GD  + IPGV GIG   A++L+  F SL N+   +D++  ++ +K L      A LS  L  L+ D+P
Sbjct:   74 PMPEALSNTLPALKSYLAEQGVNSIDAAS-EADDVIATLASKLVANGGKAIIVSTDKGFTQLSDPYIQRWD----HFNQHYMTIEEREEKLG-VEHSQFIDYLALAGDSGNKIPGVPGIGPKSAIELLRTFRSLANIYASLDKIGAKQAKK-LEAGKQMARLSYKLVQLQTDIP 240          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_ALISL (Uncharacterized exonuclease xni OS=Aliivibrio salmonicida (strain LFI1238) GN=xni PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 58/193 (30.05%), Postives = 101/193 (52.33%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEE--ERTRKALMTFADQAVLSKNLALLRCDLPFYMVPFTTGDIAFEKPK 573
            P P+ + +G+  ++ S   + +  +   G EADD++ TLA +      +V +VS DK + Q+LSP+LR+     R +    +  E F  K   LKP Q  D   L G  +  I G+ GIG   A++++T+F ++E      ++ +E  ++ RK    + + A+L + +A LR D+    + F   DI +EKP+
Sbjct:   77 PMPEALQKGMDAIQESWWKLGIDSLLSDGDEADDLVATLANKVASRNEQVTIVSTDKGYCQLLSPTLRI-----RDYFQHRWLDEPFIEKEFGLKPEQLADYWGLAGISSSKITGIPGIGPKAALEILTQFPTIE----AANESDELPKKYRKKFDEYYNTAILCRKVAGLRTDIE---LGFNLQDIRYEKPE 257          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: EX53_BUCBP (5'-3' exonuclease OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=pol PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 54/177 (30.51%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKA------LMTFADQAVLSKNLALLRCDL 519
            P+ + + +  +   IK + + +I +P VEADD+IGTLA +     + + + + DKD  Q+++  + +L     G            +KYG + P    D++ L+GD +DNIPGV  +G   A+ L+  FGSLEN+   ++++ +   +KA      L T+   A LS+ LA ++ D+
Sbjct:   86 PNDLKEQILPIHHIIKHIGIPIISIPHVEADDIIGTLATKLYKKKYFILISTNDKDLAQLVNIHIHVLI----GTSNIVLDESKVKKKYGII-PKLIPDLLGLMGDNSDNIPGVPTVGKKTALILLKTFGSLENIYNNIEKIPKCLIKKAKTIYNNLHTYKKLAFLSQKLATIKTDI 257          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHESR (Uncharacterized exonuclease xni OS=Shewanella sp. (strain MR-7) GN=xni PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 56/174 (32.18%), Postives = 92/174 (52.87%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            P P+ +  GL  L+  +K++ ++ I     EADDVI TLA+++  A  +  +VS DK F Q+  P +         F+     + +  +K G +  +QF+D+++L GD  + IPG+ GIG   A +L+  F +L  L   +  +  ++ +K L    D A LS  LA L+ DLP
Sbjct:   74 PMPEPLAAGLSALQEHLKSLPIQSIYA-AAEADDVIATLAMKTAKAQGEAVIVSTDKGFSQLNHPRISQWD----HFNQQYLNIAELEQKLG-VDRNQFLDLMALAGDSGNKIPGIAGIGPKSAAELLRTFRTLATLFSSLSNLGAKQAKK-LAEGRDMARLSYKLAQLQTDLP 240          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHESM (Uncharacterized exonuclease xni OS=Shewanella sp. (strain MR-4) GN=xni PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 56/174 (32.18%), Postives = 92/174 (52.87%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            P P+ +  GL  L+  +K++ ++ I     EADDVI TLA+++  A  +  +VS DK F Q+  P +         F+     + +  +K G +  +QF+D+++L GD  + IPG+ GIG   A +L+  F +L  L   +  +  ++ +K L    D A LS  LA L+ DLP
Sbjct:   74 PMPEPLAAGLSALQEHLKSLPIQSIYA-AAEADDVIATLAMKTAKAQGEAVIVSTDKGFSQLNHPRISQWD----HFNQQYLNIAELEQKLG-VDRNQFLDLMALAGDSGNKIPGIAGIGPKSAAELLRTFRTLATLFSSLSNLGAKQAKK-LAEGRDMARLSYKLAQLQTDLP 240          
The following BLAST results are available for this feature:
BLAST of FC925495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
DPO1_PSEAE2.947e-1735.39DNA polymerase I OS=Pseudomonas aeruginosa GN=polA... [more]
XNI_SHEAM3.849e-1733.33Uncharacterized exonuclease xni OS=Shewanella amaz... [more]
XNI_SHEPW5.027e-1733.91Uncharacterized exonuclease xni OS=Shewanella piez... [more]
XNI_SHELP5.027e-1734.48Uncharacterized exonuclease xni OS=Shewanella loih... [more]
DPO1_BORBU6.565e-1728.07DNA polymerase I OS=Borrelia burgdorferi GN=polA P... [more]
XNI_SHESH1.120e-1634.48Uncharacterized exonuclease xni OS=Shewanella sedi... [more]
XNI_ALISL1.120e-1630.05Uncharacterized exonuclease xni OS=Aliivibrio salm... [more]
EX53_BUCBP1.120e-1630.515'-3' exonuclease OS=Buchnera aphidicola subsp. Ba... [more]
XNI_SHESR7.259e-1632.18Uncharacterized exonuclease xni OS=Shewanella sp. ... [more]
XNI_SHESM7.259e-1632.18Uncharacterized exonuclease xni OS=Shewanella sp. ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ04FM1 TF Citrus clementina cDNA clone KN0AAP3YJ04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925495 ID=FC925495; Name=FC925495; organism=Citrus clementina; type=EST; length=736bp
CCTACACCTGATACTATAGTTCAGGGGCTTCAATATTTGAAAGCATCCAT
CAAGGCTATGTCCGTTAAGGTGATTGAGGTACCTGGTGTGGAAGCTGACG
ATGTGATTGGGACATTGGCTGTGAGGAGTGTTGATGCTGGGTTCAAGGTA
CGAGTTGTCTCCCCAGATAAAGACTTCTTTCAGATTCTCTCGCCTTCATT
ACGTCTTCTACGGATTGCACCCCGTGGATTTGACATGGCTTCATTTGGGA
TGGAGGATTTTGCTAGAAAGTATGGAGAACTGAAACCTTCGCAGTTTGTC
GATGTGATTTCTCTTGTGGGTGACAAAGCTGATAATATTCCAGGAGTTGA
AGGGATTGGAGACGTTCGTGCGGTGCAACTCATTACAAAATTTGGATCGT
TGGAGAATTTGTTGCAATGTGTTGATCAAGTTGAGGAGGAACGTACGAGA
AAGGCGTTGATGACTTTTGCTGATCAAGCTGTTCTAAGCAAGAACTTGGC
ATTACTACGCTGTGATCTTCCGTTCTACATGGTACCATTTACTACTGGAG
ATATTGCATTTGAAAAACCAAAGGATAATGGGGAGAAATTCACAAGCCTG
TTGACTGCCATAAGTGCCTATGCAGAGGGGTTTTCGGCCGATCCAATAAT
AAGGAGAGCCATATATTTGTGGAAAAAACTTGAAGCTCAGTGTTGAAATT
GTCTTACACACTCATACTCAATGAGCTGCCTAACCT
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