FC925495
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_PSEAE (DNA polymerase I OS=Pseudomonas aeruginosa GN=polA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17 Identity = 63/178 (35.39%), Postives = 97/178 (54.49%), Query Frame = 1 Query: 7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF-GSLENLLQCVDQVEEERTRKA------LMTFADQAVLSKNLALLRCDL 519 PD + ++ L AS++A+ + ++ V GVEADDVIGTLA S A V + + DKD Q++ + L+ + ++ K+G + P +D ++L+GDK DNIPGV G+G+ A+ L+T G LE L +D+V E R A L +QA LS LA ++ D+ Sbjct: 82 PDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLARSSAAADRPVVISTGDKDMAQLVDGHITLVNT----MTGSRLDVDGVKEKFG-VGPELIIDFLALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEENREQAFLSYQLATIKTDV 254
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHEAM (Uncharacterized exonuclease xni OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=xni PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17 Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLPFYM 531 P P+ + +GL LK ++ + V + EADD+I TLA + G + +VS DK Q++SP +R F F +E F K G ++ Q +D I+L GD + IPG+ GIG A +L+ + SL NL + + + K L D A LS LA L+ +LP ++ Sbjct: 74 PMPEALAKGLPALKTKLETLDVHSVNADS-EADDIIATLACKLAATGGEAIIVSTDKGLLQLMSPHIRQWDHFAGQF----FDIEAFEAKLG-IERHQLLDYIALCGDSGNKIPGIPGIGPKSASELLRTYRSLANLYHSLGTLGSRQANK-LREGRDMARLSYKLAKLQTELPLHL 243
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHEPW (Uncharacterized exonuclease xni OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=xni PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17 Identity = 59/174 (33.91%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 P P+ + GL +K+ + + +E EADDVI TLA + V G + +VS DK F Q+ P+++ F+ +E +K G ++ QF+D ++L GD + IPGV GIG AV+L+ F SL N+ ++QV ++ +K L A LS L L+ D+P Sbjct: 74 PMPEALSNGLGDIKSYLAEHHIASLEADS-EADDVIATLATKLVSIGGEAIIVSTDKGFCQLKHPNIKQWD----HFNQTYMTVEAMEQKLG-VEHKQFIDYLALAGDSGNKIPGVPGIGPKSAVELLKIFRSLANIYSSIEQVGSKQAKK-LEAGKHLARLSYKLVQLQLDMP 240
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHELP (Uncharacterized exonuclease xni OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=xni PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 P P+ + Q L LK + I+ EADDVI TLA + V A + +VS DK F Q+LSP ++L F+ + +ED R+ G + SQF+D +++ GD + IPG+ GIG A +L+ F +L N+ +D++ ++ +K L A LS L L+ D+P Sbjct: 74 PMPEALSQALPALKQHLAERGFHSIDAIA-EADDVIATLASKMVQAKGEAIIVSTDKGFTQLLSPQIQLWD----HFNQQAITIEDRERQLG-VDRSQFIDFLAMAGDSGNKIPGIPGIGPKSACELLKTFRTLANVYASLDKIGAKQAKK-LEEGRALARLSYKLVQLQTDIP 240
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_BORBU (DNA polymerase I OS=Borrelia burgdorferi GN=polA PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17 Identity = 48/171 (28.07%), Postives = 94/171 (54.97%), Query Frame = 1 Query: 7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDL 519 PD ++ + ++K + + + E+ G EADD++ + A ++ + ++SPDKD Q +S +++L+I F E +K+G + Q D +++VGD++DNIPG++GIG A L+ +F +L+ + ++ + ++ R+ L+ + A LS L L +L Sbjct: 82 PDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSF--IEMDNEYVTKKFG-VNSFQIKDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEIINKKH-RELLIKEKENAFLSYELVSLEENL 248
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHESH (Uncharacterized exonuclease xni OS=Shewanella sediminis (strain HAW-EB3) GN=xni PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16 Identity = 60/174 (34.48%), Postives = 91/174 (52.30%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 P P+ + L LK+ + V I+ EADDVI TLA + V G K +VS DK F Q+ P ++ F+ +E+ K G ++ SQF+D ++L GD + IPGV GIG A++L+ F SL N+ +D++ ++ +K L A LS L L+ D+P Sbjct: 74 PMPEALSNTLPALKSYLAEQGVNSIDAAS-EADDVIATLASKLVANGGKAIIVSTDKGFTQLSDPYIQRWD----HFNQHYMTIEEREEKLG-VEHSQFIDYLALAGDSGNKIPGVPGIGPKSAIELLRTFRSLANIYASLDKIGAKQAKK-LEAGKQMARLSYKLVQLQTDIP 240
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_ALISL (Uncharacterized exonuclease xni OS=Aliivibrio salmonicida (strain LFI1238) GN=xni PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16 Identity = 58/193 (30.05%), Postives = 101/193 (52.33%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEE--ERTRKALMTFADQAVLSKNLALLRCDLPFYMVPFTTGDIAFEKPK 573 P P+ + +G+ ++ S + + + G EADD++ TLA + +V +VS DK + Q+LSP+LR+ R + + E F K LKP Q D L G + I G+ GIG A++++T+F ++E ++ +E ++ RK + + A+L + +A LR D+ + F DI +EKP+ Sbjct: 77 PMPEALQKGMDAIQESWWKLGIDSLLSDGDEADDLVATLANKVASRNEQVTIVSTDKGYCQLLSPTLRI-----RDYFQHRWLDEPFIEKEFGLKPEQLADYWGLAGISSSKITGIPGIGPKAALEILTQFPTIE----AANESDELPKKYRKKFDEYYNTAILCRKVAGLRTDIE---LGFNLQDIRYEKPE 257
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: EX53_BUCBP (5'-3' exonuclease OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=pol PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16 Identity = 54/177 (30.51%), Postives = 95/177 (53.67%), Query Frame = 1 Query: 7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKA------LMTFADQAVLSKNLALLRCDL 519 P+ + + + + IK + + +I +P VEADD+IGTLA + + + + + DKD Q+++ + +L G +KYG + P D++ L+GD +DNIPGV +G A+ L+ FGSLEN+ ++++ + +KA L T+ A LS+ LA ++ D+ Sbjct: 86 PNDLKEQILPIHHIIKHIGIPIISIPHVEADDIIGTLATKLYKKKYFILISTNDKDLAQLVNIHIHVLI----GTSNIVLDESKVKKKYGII-PKLIPDLLGLMGDNSDNIPGVPTVGKKTALILLKTFGSLENIYNNIEKIPKCLIKKAKTIYNNLHTYKKLAFLSQKLATIKTDI 257
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHESR (Uncharacterized exonuclease xni OS=Shewanella sp. (strain MR-7) GN=xni PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16 Identity = 56/174 (32.18%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 P P+ + GL L+ +K++ ++ I EADDVI TLA+++ A + +VS DK F Q+ P + F+ + + +K G + +QF+D+++L GD + IPG+ GIG A +L+ F +L L + + ++ +K L D A LS LA L+ DLP Sbjct: 74 PMPEPLAAGLSALQEHLKSLPIQSIYA-AAEADDVIATLAMKTAKAQGEAVIVSTDKGFSQLNHPRISQWD----HFNQQYLNIAELEQKLG-VDRNQFLDLMALAGDSGNKIPGIAGIGPKSAAELLRTFRTLATLFSSLSNLGAKQAKK-LAEGRDMARLSYKLAQLQTDLP 240
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: XNI_SHESM (Uncharacterized exonuclease xni OS=Shewanella sp. (strain MR-4) GN=xni PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16 Identity = 56/174 (32.18%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 P P+ + GL L+ +K++ ++ I EADDVI TLA+++ A + +VS DK F Q+ P + F+ + + +K G + +QF+D+++L GD + IPG+ GIG A +L+ F +L L + + ++ +K L D A LS LA L+ DLP Sbjct: 74 PMPEPLAAGLSALQEHLKSLPIQSIYA-AAEADDVIATLAMKTAKAQGEAVIVSTDKGFSQLNHPRISQWD----HFNQQYLNIAELEQKLG-VDRNQFLDLMALAGDSGNKIPGIAGIGPKSAAELLRTFRTLATLFSSLSNLGAKQAKK-LAEGRDMARLSYKLAQLQTDLP 240 The following BLAST results are available for this feature:
BLAST of FC925495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925495 ID=FC925495; Name=FC925495; organism=Citrus clementina; type=EST; length=736bpback to top |