FC925499
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13 Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 2 Query: 152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAI 439 WVPVT LG+ V G+ S ++I PIKE I+D ++ L DEV+ I +Q+ T +G+R +F+A VV+G+ +G+VG G +V TAI+ AI Sbjct: 8 WVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAI 102
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.494e-13 Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 2 Query: 152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448 W P T+LGR V +G+I S++ LP+KE +++D L+ L+DEV+ I VQ+ T +G+R +F+ VV+G+ DG+VG +V AI+ AI +A Sbjct: 5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVA 102
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.548e-13 Identity = 38/99 (38.38%), Postives = 63/99 (63.64%), Query Frame = 2 Query: 152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448 W P T+LGR+V++G + S+EQ LP+KE +++D L+ L DEV+ I VQ+ T +G+R +F+ V +G+ +G +G +V +AI+ AI +A Sbjct: 11 WTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLL-PGLDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVA 108
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13 Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 2 Query: 149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMK-------------IMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAI 439 +W P TKLGRLV+EGKI ++++I + I+E +I+D L+ + L+ E MK QK+T G +TR++ +VGD DGHVG+G+ S ++ A AI Sbjct: 6 EWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAI 114
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 7.415e-13 Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 2 Query: 152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448 W P T+LG+ V EG+I S+++ LP+KE +++D L+ L+DEV+ I VQ+ T +G+R +F+ V VG+ DG +G +V AI+ AI +A Sbjct: 7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLVPD-LEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIA 104
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.652e-12 Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448 W P T+LG LV++G++ + + LP+KE +I+D L+ L DEV+ I VQ+ T +G+R +F+ V +G+ DG+VG +V AI+ AI +A Sbjct: 7 WQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVA 104
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12 Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 2 Query: 152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGA 436 WVP T LG+ V G+I SLE+I I+E II L+ LK EV+ + +QK T GQ TRFKA V G+ +G++G+G +K++ AI A Sbjct: 27 WVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKA 120 The following BLAST results are available for this feature:
BLAST of FC925499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925499 ID=FC925499; Name=FC925499; organism=Citrus clementina; type=EST; length=448bpback to top |