FC925499

Overview
NameFC925499
Unique NameFC925499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAI 439
            WVPVT LG+ V  G+  S ++I     PIKE  I+D ++   L DEV+ I  +Q+ T +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI
Sbjct:    8 WVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAI 102          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.494e-13
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            W P T+LGR V +G+I S++      LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +A
Sbjct:    5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVA 102          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.548e-13
Identity = 38/99 (38.38%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            W P T+LGR+V++G + S+EQ     LP+KE +++D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ +G +G       +V +AI+ AI +A
Sbjct:   11 WTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLL-PGLDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVA 108          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMK-------------IMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAI 439
            +W P TKLGRLV+EGKI ++++I  +   I+E +I+D L+ + L+ E MK                 QK+T  G +TR++   +VGD DGHVG+G+  S ++  A   AI
Sbjct:    6 EWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAI 114          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.415e-13
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 2
Query:  152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            W P T+LG+ V EG+I S+++     LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  V VG+ DG +G       +V  AI+ AI +A
Sbjct:    7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLVPD-LEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIA 104          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.652e-12
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            W P T+LG LV++G++  + +     LP+KE +I+D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ DG+VG       +V  AI+ AI +A
Sbjct:    7 WQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVA 104          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  152 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGA 436
            WVP T LG+ V  G+I SLE+I      I+E  II  L+   LK EV+ +  +QK T  GQ TRFKA V  G+ +G++G+G   +K++  AI  A
Sbjct:   27 WVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKA 120          
The following BLAST results are available for this feature:
BLAST of FC925499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_METLZ1.144e-1342.7130S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_NATPD1.494e-1340.4030S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_HALWD2.548e-1338.3830S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_NANEQ5.677e-1338.1830S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_HALMA7.415e-1339.3930S ribosomal protein S5P OS=Haloarcula marismortu... [more]
RS5_HALSA1.652e-1238.3830S ribosomal protein S5P OS=Halobacterium salinar... [more]
RS5_CENSY8.198e-1243.1630S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ06FM1 TF Citrus clementina cDNA clone KN0AAP3YJ06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925499 ID=FC925499; Name=FC925499; organism=Citrus clementina; type=EST; length=448bp
CTTCACTCCCTATACACACAAGAACAAAACCATGGCTGAACGAGGTGGCG
AGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGT
GGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAA
GTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCA
GGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAA
ATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCATGAAGAT
CATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGG
CCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAG
TGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCG
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