FC925508

Overview
NameFC925508
Unique NameFC925508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.657e-22
Identity = 62/163 (38.04%), Postives = 87/163 (53.37%), Query Frame = 3
Query:   78 APAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 566
            A A VVGWPPIRS+RKN    +  K     +  DV +K          G+   +VK++MDG P  RKVDL  Y +Y+ +S  ++++F G    +      G  N+++            GEY L YED +GD MLVGDVPW MF  +  RLR++K S+   L+
Sbjct:  120 AKAQVVGWPPIRSYRKNTMATNQIK----SNKEDVDAKQ---------GQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKE-----GAENQKD------------GEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLA 252          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.826e-22
Identity = 66/184 (35.87%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   15 AFPSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 566
            A  ++A A+       +Q   A A VVGWPPIRS+RKN    S    PA +  +D  +K         P     +VK++MDG P  RKVDL  Y +Y++LS A++++F        +S+  G   +          L    E  L YED + D MLVGDVPW MF  +  RLR++K S+   L+
Sbjct:   84 AAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQ---PALKGKDDGEAKQA-------PASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESN--GKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLA 255          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.820e-22
Identity = 72/198 (36.36%), Postives = 95/198 (47.98%), Query Frame = 3
Query:    6 EKIAFPSSAPAKN--TAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSR---EKCRT 584
            EK++   SA   +  TA P+  + R   A VVGWPP+RSFRKN+    A K  A+                         VK++MDG P  RK+D+  Y SY +LS A   +F      +     G     +E  K     L    EY   YED +GD MLVGDVPW MFV +  RLR++K SE   L+    EKC++
Sbjct:   71 EKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVL---AEKCKAAA-----------------------LVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGK----CGSHQQLKESNK-----LRDDLEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 69/192 (35.94%), Postives = 94/192 (48.96%), Query Frame = 3
Query:    9 KIAFPSSAPAKNTAVPNSSQKRTAPAP------VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 566
            K + PSS+ A + A  +S     A AP      VVGWPP+RSFRKN   A                                FVK+ +DG P  RKVDL AY  Y++L  A+ + F      ++ +         ++E+ +   ++G+ EY   YED +GD MLVGDVPW MFV T  RLR++KSSE   L+
Sbjct:   44 KRSSPSSSDAADAADNSSPLAAAADAPPAPKARVVGWPPVRSFRKNALAAK-------------------------------FVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFA---------DDERKLVDAVNGT-EYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLA 194          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 69/172 (40.12%), Postives = 89/172 (51.74%), Query Frame = 3
Query:   60 SSQKRTAPAP---VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 566
            S+   + P+P   VVGWPP+R+FRKN   A A+   AS S                   K  FVK+ +DG P  RKVDL AY  Y++L AA+ + F      ++  +        EE K +  V     EY   YED +GD MLVGDVPW MFV T  RLR++KSSE   L+
Sbjct:   69 STATESPPSPKARVVGWPPVRAFRKNALAALAA---ASSS-------------------KAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGN--------EEMKLVDAV--SGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLA 208          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 65/194 (33.51%), Postives = 95/194 (48.97%), Query Frame = 3
Query:    6 EKIAFPSSAP---AKNTAVPNSSQKRTAPAP-----VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 563
            E+ A P S P   +K        Q +  PA      VVGWPP+RS+RK+    + +   +   P    ++T  ++     G    FVK++MDG P  RK+DL  Y  Y +L  A++ +F   L     ++A   VN  +              + + YED +GD MLVGDVP+ MF+ST  RLR++K SE   L
Sbjct:   18 EEAAPPPSTPRAGSKRALAGEPDQAKIKPAAAAKAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDV--AGAGGLFVKVSMDGAPYLRKIDLKVYKGYRELREALEAMF---LCFSGGAAADAAVNPSD--------------FAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 64/153 (41.83%), Postives = 87/153 (56.86%), Query Frame = 3
Query:   60 SSQKRTAP-APVVGWPPIRSFRKNLAG---ASASKLPASESP-NDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGE-YTLVYEDNEGDRMLVGDVPW 500
            S + R A  A +VGWPP+R+FRKNL+    A A  L     P +D    + D      P     FVK+N++G  +GRK+DL A+ SY+ LS A+  +F G L       + G+  +  E   +  + +GS + Y LVYEDNEGDRMLVGDVPW
Sbjct:   30 SGENRAASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPS-STMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-------SDGIATRDNE---LQRMEEGSKKRYVLVYEDNEGDRMLVGDVPW 171          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 57/158 (36.08%), Postives = 81/158 (51.27%), Query Frame = 3
Query:   78 APAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSE 551
            A A VVGWPP+R++R+N    +A+   A++       K  DEK   +      +VK++MDG P  RKVDL     Y +L  A+D LF    +A                          G++ + YED +GD MLVGDVPW MF+S+  +LR++K SE
Sbjct:   85 AKAQVVGWPPVRAYRRNTFHQAAAAAAATK-------KGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFTKCFSATASDGCS------------------DGQFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSE 217          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 65/186 (34.95%), Postives = 87/186 (46.77%), Query Frame = 3
Query:    6 EKIAFPSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 563
            E I+  S    ++  VP       A A VVGWPPIRS+RKN                      V +K   E      +VK++M G P  RK+DL  Y SY +L  A++ +F+ +              +  E +   G      EY   YED +GD MLVGDVPW+MFVS+  RLR++K SE   L
Sbjct:   49 ESISNGSDVTKEDNVVP------PAKAQVVGWPPIRSYRKN---------------------NVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCIFG------------EYSEREGYNG-----SEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGL 190          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 61/179 (34.08%), Postives = 84/179 (46.93%), Query Frame = 3
Query:   27 SAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 563
            S+ +  T+  N    + A   VVGWPPIRSFRKN                     ++ +K   +      ++K++M G P  RK+DL  Y SY +L  A+  LF+                +  E +   G      EY   YED +GD MLVGDVPW+MFVS+  RLR++K SE   L
Sbjct:   60 SSDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKN---------------------SLQQKKVEQGDGTGMYLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLFKCTFG------------EYSEREGYNG-----SEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGL 200          
The following BLAST results are available for this feature:
BLAST of FC925508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA3_ORYSJ1.657e-2238.04Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA21_ORYSJ2.826e-2235.87Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA11_ORYSJ4.820e-2236.36Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA1_ORYSJ8.222e-2235.94Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA15_ORYSJ8.222e-2240.12Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA31_ORYSJ1.832e-2133.51Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA22_ORYSJ3.124e-2141.83Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA24_ORYSJ4.081e-2136.08Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
AX22D_PHAAU4.081e-2134.95Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
AX22E_PHAAU1.551e-2034.08Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ10FM1 TF Citrus clementina cDNA clone KN0AAP3YJ10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925508 ID=FC925508; Name=FC925508; organism=Citrus clementina; type=EST; length=611bp
CTGCCGAAAAGATTGCATTTCCATCTTCAGCTCCTGCAAAAAATACAGCT
GTTCCCAACAGCTCTCAGAAAAGGACTGCTCCTGCTCCAGTGGTGGGCTG
GCCTCCAATTCGTTCATTTAGGAAGAATCTTGCTGGCGCAAGTGCTTCTA
AATTACCAGCTTCTGAGTCTCCTAACGATGTCCCAAGCAAGACTGTTGAT
GAAAAACCGGCTCATGAGCCTGGCAGGAAAAACCCTTTTGTGAAGATTAA
CATGGATGGTGTCCCTATTGGAAGGAAAGTTGACCTCAATGCTTATGATA
GCTATGAAAAACTCTCAGCTGCTGTTGATGAACTCTTCAGAGGCCTCCTT
GCAGCTCAAAGAGATTCCTCTGCTGGTGGATTAGTGAACAAGCAAGAGGA
AGAGAAAGCAATTACTGGTGTTTTGGATGGAAGTGGGGAATATACCCTTG
TTTATGAGGATAACGAAGGTGACAGGATGCTGGTTGGGGATGTCCCGTGG
CACATGTTTGTATCAACAGTGACGAGGCTGCGCGTGTTGAAGAGCTCTGA
AGTTTCTGCCTTAAGCCGTGAGAAGTGCAGGACAAGATACTGGCTTGACT
GACCCATGCAT
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