FC925508

Overview
NameFC925508
Unique NameFC925508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 61/171 (35.67%), Postives = 82/171 (47.95%), Query Frame = 3
Query:   51 VPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 563
            V +SS    A A +VGWPPIRS+RKN                            HE      FVK++MDG P  RK+DL  Y  Y +L  A++ +F+  +         G  +++E  K          EY   YED +GD MLVGDVPW MFV++  RLR++K +E   L
Sbjct:   58 VESSSAAPPAKAKIVGWPPIRSYRKN--------------------------SLHEADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFKLTI---------GEYSEREGYKG--------SEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGL 185          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 60/174 (34.48%), Postives = 88/174 (50.57%), Query Frame = 3
Query:   78 APAPVVGWPPIRSFRKNL---AGASASKLPASESPNDVPSKTVDEKPAHEPGRKNP-------FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSG--EYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 563
            A A VVGWPP+RS+RK+      A+ASK  A+ S  +   + + +  A  P   +         VK++MDG P  RK+DL  Y  Y +L  A++ +F                         +G  DG+   E+ + Y+D +GD MLVGDVP+ MF ST  +LR++K SE + L
Sbjct:   67 AKAQVVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMF----------------------VCFSGAADGANPSEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGL 218          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 60/179 (33.52%), Postives = 87/179 (48.60%), Query Frame = 3
Query:   36 AKNTAVPNSSQKRTAPAP---VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 563
            A    + ++ +  TA  P   +VGWPP+RS+RKN                      V  K +   G+ N +VK++MDG P  RK+DL  Y  Y +L  +++ +F+              V +  E +   G      ++   YED +GD MLVGDVPW MFVS+  RLR++K SEV  L
Sbjct:   42 ATEKEIESTGKTETASPPKAQIVGWPPVRSYRKN---------------------NVQTKKSESEGQGN-YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFS------------VGEYFEREGYKG-----SDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 3
Query:   60 SSQKRTAPAP-----VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAA--QRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 563
            SS ++T  +P     +VGWPP+RS+RKN                ++ SK    K   E   +  +VK++MDG P  RK+DL+ Y  Y +L  A++ +F+  +    +RD   G                    ++   YED +GD ML+GDVPW MF+ T  RLR++K SE   L
Sbjct:   50 SSSRKTETSPPRKAQIVGWPPVRSYRKN----------------NIQSK----KNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMFKFSVGEYFERDGYKGS-------------------DFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA14_ORYSJ (Auxin-responsive protein IAA14 OS=Oryza sativa subsp. japonica GN=IAA14 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 58/158 (36.71%), Postives = 82/158 (51.90%), Query Frame = 3
Query:   90 VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNP----FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSE 551
            VVGWPP+ S+R++   +S+S   A+        K   E    + GRKN     +VK++MDG P  RKVDL  Y  Y +L  A+D LF G  +A   +SA                      + + YED +GD ML GDVPW MF+S+  +LR+++ SE
Sbjct:   65 VVGWPPVGSYRRSTFQSSSSSTAAAAK-----GKGGGET---DQGRKNKGGGLYVKVSMDGAPYLRKVDLRMYGGYRELRDALDALF-GCFSADASASAA--------------------HFAVAYEDKDGDLMLAGDVPWDMFISSCKKLRIMRGSE 193          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 62/166 (37.35%), Postives = 80/166 (48.19%), Query Frame = 3
Query:   75 TAPAP---VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 563
            +AP P   +VGWPPIRS+RKN            E   D                   FVK++MDG P  RKVDL  Y  Y +L  A++ +F+  LA          + +  E +   G      EY   YED +GD MLVGDVPW MFV++  RLR++K SE   L
Sbjct:   70 SAPPPKAKIVGWPPIRSYRKN---------SVQEGEGD-----------------GIFVKVSMDGAPYLRKVDLKVYGGYPELLKALETMFK--LA----------IGEYSEREGYKG-----SEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGL 192          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.407e-18
Identity = 66/196 (33.67%), Postives = 90/196 (45.92%), Query Frame = 3
Query:   12 IAFP-SSAPAKNTAVPNSSQKRTA-------PAP---VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 566
            +A P SS+ + +TA P   +   A       P+P    VGWPP+R++R+N                             E   +   VK+ +DG P  RKVDL A+  Y  L  A+  +F   LA +      G   K  +   +TG      EY   YED +GD MLVGDVPW MFV +  R+R++KSSE   LS
Sbjct:   25 LALPGSSSSSSSTADPERKRAAHADHADAKPPSPKARAVGWPPVRAYRRNAL--------------------------REDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASCLAVRGGGGGDGEGTKLVD--LVTGA-----EYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLS 187          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.575e-17
Identity = 60/180 (33.33%), Postives = 86/180 (47.78%), Query Frame = 3
Query:   24 SSAPAKNTAVPNSSQKRTAPAP----VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSE 551
            S   + N    N S + +AP P    +VGWPP+RS RKN    + S                             +VK++MDG P  RK+DL  Y +Y +L  A++ +F+  +         G  +++E  K       GSG +   YED +GD MLVGDVPW MF S+  +LR++K SE
Sbjct:   30 SCVRSNNKRKNNDSTEESAPPPAKTQIVGWPPVRSNRKNNNNKNVS-----------------------------YVKVSMDGAPYLRKIDLKMYKNYPELLKALENMFKFTV---------GEYSEREGYK-------GSG-FVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSE 163          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 54/162 (33.33%), Postives = 78/162 (48.15%), Query Frame = 3
Query:   78 APAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELF--RGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVS 557
            A + VVGWPP+ S+RK  +   AS                             +VK++MDGVP  RK+DL +   Y+ L+ A+D+LF  RG+  A +D                      + EY  +YED +GD ML GDVPW MF+ +  RLR++K S+ +
Sbjct:   67 AKSQVVGWPPVCSYRKKNSCKEASTTKVGLG----------------------YVKVSMDGVPYLRKMDLGSSQGYDDLAFALDKLFGFRGIGVALKDGD--------------------NCEYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDAT 186          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.026e-16
Identity = 55/158 (34.81%), Postives = 77/158 (48.73%), Query Frame = 3
Query:   90 VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 563
            +VGWPP+RS RKN    S                               +VK++MDG P  RK+DL  Y +Y +L  A++ +F+ ++         G   ++E  K       GSG +   YED +GD MLVGDVPW MF S+  RLR++K S+  AL
Sbjct:   61 IVGWPPVRSSRKNNNSVS-------------------------------YVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVMI---------GEYCEREGYK-------GSG-FVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170          
The following BLAST results are available for this feature:
BLAST of FC925508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA4_PEA5.892e-2035.67Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
IAA12_ORYSJ5.892e-2034.48Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]
IAA4_ARATH1.313e-1933.52Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA3_ARATH8.508e-1933.14Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
IAA14_ORYSJ1.111e-1836.71Auxin-responsive protein IAA14 OS=Oryza sativa sub... [more]
AX22B_PHAAU1.111e-1837.35Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
IAA23_ORYSJ9.407e-1833.67Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA1_ARATH3.575e-1733.33Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
IAA19_ARATH1.358e-1633.33Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
IAA2_ARATH3.026e-1634.81Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ10FM1 TF Citrus clementina cDNA clone KN0AAP3YJ10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925508 ID=FC925508; Name=FC925508; organism=Citrus clementina; type=EST; length=611bp
CTGCCGAAAAGATTGCATTTCCATCTTCAGCTCCTGCAAAAAATACAGCT
GTTCCCAACAGCTCTCAGAAAAGGACTGCTCCTGCTCCAGTGGTGGGCTG
GCCTCCAATTCGTTCATTTAGGAAGAATCTTGCTGGCGCAAGTGCTTCTA
AATTACCAGCTTCTGAGTCTCCTAACGATGTCCCAAGCAAGACTGTTGAT
GAAAAACCGGCTCATGAGCCTGGCAGGAAAAACCCTTTTGTGAAGATTAA
CATGGATGGTGTCCCTATTGGAAGGAAAGTTGACCTCAATGCTTATGATA
GCTATGAAAAACTCTCAGCTGCTGTTGATGAACTCTTCAGAGGCCTCCTT
GCAGCTCAAAGAGATTCCTCTGCTGGTGGATTAGTGAACAAGCAAGAGGA
AGAGAAAGCAATTACTGGTGTTTTGGATGGAAGTGGGGAATATACCCTTG
TTTATGAGGATAACGAAGGTGACAGGATGCTGGTTGGGGATGTCCCGTGG
CACATGTTTGTATCAACAGTGACGAGGCTGCGCGTGTTGAAGAGCTCTGA
AGTTTCTGCCTTAAGCCGTGAGAAGTGCAGGACAAGATACTGGCTTGACT
GACCCATGCAT
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