FC925525

Overview
NameFC925525
Unique NameFC925525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PATA2_SOLTU (Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.575e-39
Identity = 86/187 (45.99%), Postives = 114/187 (60.96%), Query Frame = 2
Query:   41 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AA +I  FY EHGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC S +AAPTYFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSAAAAPTYFPPHYFAT 202          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PATD3_SOLTU (Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.638e-38
Identity = 85/187 (45.45%), Postives = 115/187 (61.50%), Query Frame = 2
Query:   41 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T+M+T PN+   PF+AA +I  F+ EHGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I + DIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTYFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQENLGETRVHQALTEVAISSLDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFTT 202          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PAT12_SOLTU (Patatin-12 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.819e-38
Identity = 85/187 (45.45%), Postives = 113/187 (60.43%), Query Frame = 2
Query:   41 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            +TVLS              L FL  +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AA +I  FY EHGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLGGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFIT 202          

HSP 2 Score: 21.1718 bits (43), Expect = 4.819e-38
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  606 SDSGRTRTFDLVDGGVA 656
            + +G    F+LVDGGVA
Sbjct:  204 TSNGDIYEFNLVDGGVA 220          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.806e-37
Identity = 85/187 (45.45%), Postives = 113/187 (60.43%), Query Frame = 2
Query:   41 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AA +I  FY EHGP IF   +   F               KYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTYFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFFR--------------KYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT 201          
The following BLAST results are available for this feature:
BLAST of FC925525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PATA2_SOLTU9.575e-3945.99Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1[more]
PATD3_SOLTU3.638e-3845.45Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT12_SOLTU4.819e-3845.45Patatin-12 OS=Solanum tuberosum PE=2 SV=1[more]
PAT16_SOLTU1.806e-3745.45Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL02FM1 TF Citrus clementina cDNA clone KN0AAP8YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925525 ID=FC925525; Name=FC925525; organism=Citrus clementina; type=EST; length=701bp
AAATAAAATGCCCTTTGCCGGTTCTGCAGAAGGAAAGAAAATAACAGTTC
TGAGCATCGATGGAGGTGGCATTAGGGGCATTATTCCGGGCACTATTTTA
GCCTTTCTTGAATCCAAGCTCCAGGAATTGGATGGACCAAGTGCAAGAAT
TGCAGATTATTTTGATGTAGTAGCAGGAACAAGCACCGGCGGATTGGTAA
CCACCATGCTTACGGCACCCAACAAGGAAGGCGGACCTTTCAGTGCTGCA
AAGGATATCAATAATTTTTATCTTGAGCACGGTCCTAAAATTTTCCCTCA
AATTAGCCGCAGCAACTTCTTGGAATCGATAGCAAGCTCTATCGATAAAC
TGCTGCTTGGACCAAAGTATGATGGGAAGTACCTGCGGACACTAGTAAAC
GAGCTACTAGGAGACGTTACTGTGAAAGAGACTCTTACCAACGTGGTTAT
ACCAACTTTTGACATCAAGCTTCTTCAACCAGTCATCTTCTCAACCACCG
ATGGAAAAGAGAACGTTTTGAAGAATGCTCGGCTGGCTGATATATGCATA
AGCACTTCTGCAGCGCCCACTTACTTCCCACCTCACTACTTGGAGACCTA
AAGACAGTGACAGTGGCAGAACCCGAACTTTTGATCTTGTTGACGGTGGA
GTTGCTGCTAATAATCCTACCCTATTTGGCAATAACCCACATATCGAAGG
A
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