FC925530

Overview
NameFC925530
Unique NameFC925530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925530 vs. ExPASy Swiss-Prot
Match: GLIP7_ARATH (GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 68/238 (28.57%), Postives = 107/238 (44.96%), Query Frame = 2
Query:  104 PAIYNFGDSNSDTGGISAAFEPIRA---PHGEGFFHKPAGRDSDGRLIIDFIAESVKLPYLSAYLN--SLGTNFRHGANFATGGSTIGKPNETIYEYGISPFFLGMQITQFN-QFKARTKELYDEAKIASDTDKLPRQEDFAKALYTFDIGQNDLSVGF---RKMSFDQLRAA---IPDIVNQLASAVQNIYQQGGRAFWIHNTGPIGCLPTNF-FYNHNPPPGFLDEHGCVKDQNNM 778
            PA + FGDS  D+G  +      RA   P+G  F   P GR  +GR ++D+ A  + LP +  YL+  S+G N   G N+A+  +  G  +ET   YG    F G QI+QF    + R +  +      +D  K       AK++   +IG ND    +    + S  Q  +       ++  L++ +  +Y  G R   +  +GP+GC+P+       N      +  GCV   NNM
Sbjct:   29 PAFFVFGDSLVDSGNNNYIPTLARANYFPYGIDFGF-PTGRFCNGRTVVDYGATYLGLPLVPPYLSPLSIGQNALRGVNYASAAA--GILDETGRHYGARTTFNG-QISQFEITIELRLRRFFQNP---ADLRKY-----LAKSIIGINIGSNDYINNYLMPERYSTSQTYSGEDYADLLIKTLSAQISRLYNLGARKMVLAGSGPLGCIPSQLSMVTGN------NTSGCVTKINNM 248          
BLAST of FC925530 vs. ExPASy Swiss-Prot
Match: GDL73_ARATH (GDSL esterase/lipase At5g03820 OS=Arabidopsis thaliana GN=At5g03820 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 64/213 (30.05%), Postives = 94/213 (44.13%), Query Frame = 2
Query:  104 PAIYNFGDSNSDTGGISAAFEPIRA---PHGEGFF-HKPAGRDSDGRLIIDFIAESV-----KLPYLSAYLNSLGTNFRHGANFATGGSTIGKPNETIYEYGISPFFLGMQITQFNQFKARTKELYDEAKIASDTDKLPRQEDFAKALYTFDIGQNDLSVGFRKMSFDQLRAAIPD-----IVNQLASAVQNIYQQGGRAFWIHNTGPIGCLP 700
            PA+   GDS  D G  +     I+A   P+G  F  H   GR S+G+L  DF AES+      +PYLS   N  GTN   GANFA+G S         Y+ G + F+  + +   NQ     KE  +  K+ +        + F+ A++    G +D    +        R   PD     ++   ++ VQN+Y  G R   +    P+GCLP
Sbjct:   29 PALIIMGDSVVDAGNNNRLNTLIKANFPPYGRDFLAHNATGRFSNGKLATDFTAESLGFTSYPVPYLSQEAN--GTNLLTGANFASGASG--------YDDGTAIFYNAITL---NQQLKNYKEYQN--KVTNIVGSERANKIFSGAIHLLSTGSSDFLQSYYINPILN-RIFTPDQYSDRLMKPYSTFVQNLYDLGARKIGVTTLPPLGCLP 225          
BLAST of FC925530 vs. ExPASy Swiss-Prot
Match: GDL65_ARATH (GDSL esterase/lipase At4g18970 OS=Arabidopsis thaliana GN=At4g18970 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 57/215 (26.51%), Postives = 89/215 (41.40%), Query Frame = 2
Query:  104 PAIYNFGDSNSDTGGISAAFEPIRA---PHGEGFFHKPAGRDSDGRLIIDFIAESVKL-PYLSAYLNSLGTNFRHGANFATGGSTIGKPNETIYEYGISPFFLGMQITQFNQFKARTKELYDEAKIASDTDKLPRQEDFAKALYTFDIGQND------LSVGFRKMSFDQLRAAIPDIVNQLASAVQNIYQQGGRAFWIHNTGPIGCLPTNFFYN 718
            P  + FGDS  D+G  +      RA   P+G  F + P GR S+G+  +D I E +    Y++ Y  + G +   G N+A+  +  G   ET  + G    F G      N        L DE + A+           +K +Y+  +G ND      + V +   S     A   D++N+    ++ +Y  G R F +   G IGC P     N
Sbjct:   27 PCYFIFGDSLVDSGNNNRLTSLARANYFPYGIDFQYGPTGRFSNGKTTVDVITELLGFDDYITPYSEARGEDILRGVNYASAAA--GIREETGRQLGARITFAGQVANHVNTVSQVVNILGDENEAAN---------YLSKCIYSIGLGSNDYLNNYFMPVYYSTGSQYSPDAYANDLINRYTEQLRIMYNNGARKFALVGIGAIGCSPNELAQN 230          
BLAST of FC925530 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 73/258 (28.29%), Postives = 108/258 (41.86%), Query Frame = 2
Query:   71 GVTNKLPPCEFPAIYNFGDSNSDTGG---ISAAFEPIRAPHGEGFFHK---PAGRDSDGRLIIDFIAESV-----KLPYLSAYLNSLGTNFRHGANFATGGSTIGKPNETIYEYGISPFFLGMQITQFNQFKARTKELYDEAKIASDTDKLPRQEDFAKALYTFDIGQND---------LSVGFRKMSFDQLRAA-IPDIVNQLASAVQNIYQQGGRAFWIHNTGPIGCLPTNFFYNHNPPPGFLDEHGCVKDQNNMA 781
            GV N        A + FGDS  D G    +S        P+G  F      P GR ++GR I D + E +      +P+L+   ++ G     G N+A+GG  I      I+   ++   + +Q+  FN  + +  +L  + K      K        K++++  IG ND         LSVG R   F Q     I D++  L   +  +YQ   R F I N GPIGC+P     N       LDE+ CV   N +A
Sbjct:   36 GVNNDKKGGGLGASFIFGDSLVDAGNNNYLSTLSRANMKPNGIDFKASGGTPTGRFTNGRTIGDIVGEELGSANYAIPFLAP--DAKGKALLAGVNYASGGGGIMNATGRIF---VNRLGMDVQVDFFNTTRKQFDDLLGKEKAKDYIAK--------KSIFSITIGANDFLNNYLFPLLSVGTR---FTQTPDDFIGDMLEHLRDQLTRLYQLDARKFVIGNVGPIGCIPYQKTINQ------LDENECVDLANKLA 271          
The following BLAST results are available for this feature:
BLAST of FC925530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
GLIP7_ARATH7.803e-1128.57GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=... [more]
GDL73_ARATH7.803e-1130.05GDSL esterase/lipase At5g03820 OS=Arabidopsis thal... [more]
GDL65_ARATH7.803e-1126.51GDSL esterase/lipase At4g18970 OS=Arabidopsis thal... [more]
GDL38_ARATH7.803e-1128.29GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL05FM1 TF Citrus clementina cDNA clone KN0AAP8YL05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925530 ID=FC925530; Name=FC925530; organism=Citrus clementina; type=EST; length=786bp
GACAATGTTGTTTTGGAGAGCTTTGGTTGCTGGGTTTTTACTATTCACAT
GGGGCGGCTTGGGCGTGAGTGGTGTTACTAATAAATTGCCACCGTGTGAG
TTCCCTGCAATTTACAATTTTGGGGACTCAAATTCGGATACTGGTGGCAT
TTCAGCTGCATTTGAGCCAATTCGAGCTCCACATGGAGAGGGGTTCTTTC
ACAAGCCAGCTGGTAGAGATTCTGATGGTCGTCTCATCATAGACTTCATT
GCTGAGAGTGTGAAGTTGCCATACTTGAGTGCATATTTGAATTCACTGGG
AACAAATTTTCGGCATGGTGCTAATTTTGCCACTGGAGGATCAACCATTG
GAAAGCCTAATGAGACTATATACGAGTATGGAATTAGTCCTTTCTTTCTG
GGTATGCAGATTACGCAATTTAACCAATTCAAAGCACGAACCAAAGAGCT
GTACGATGAAGCCAAGATTGCCTCGGATACAGACAAGCTGCCGAGACAGG
AGGACTTTGCCAAGGCTCTTTACACGTTTGATATTGGACAAAATGATCTT
TCTGTTGGATTTAGAAAGATGAGTTTTGATCAACTTCGTGCAGCAATACC
CGACATTGTTAATCAGTTAGCTTCAGCTGTTCAAAATATATATCAACAAG
GAGGCAGGGCATTTTGGATACACAATACAGGGCCTATTGGTTGCTTGCCA
ACCAATTTTTTCTACAATCATAACCCACCACCAGGCTTTCTTGATGAGCA
TGGCTGCGTCAAGGATCAAAATAACATGGCTGTGGA
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