FC925533

Overview
NameFC925533
Unique NameFC925533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46
Identity = 105/188 (55.85%), Postives = 123/188 (65.43%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCPPKM--GYRKGI 624
            M+L+ WFY IL++LGL  K  K+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEELS+G +KF  FDLGGHQ ARR+W                   ER  E+K E+DALLS E LA VPF++LGNKID P A SEDELR  LGL   TTGKG+V L    +RP   I V  C   M  GY + I
Sbjct:    1 MWLWSWFYDILSNLGLLNKHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQ-TTGKGRVPL--EGIRP---IEVFMCSVVMRQGYGEAI 182          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.902e-46
Identity = 101/190 (53.16%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   70 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK ELD+L++DE++ANVP LILGNKID P A SE+ LR   GL   TTGKG V+L + N RP   + V  C    + GY +G
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP---LEVFMCSVLKRQGYGEG 189          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.402e-46
Identity = 91/170 (53.53%), Postives = 111/170 (65.29%), Query Frame = 1
Query:   70 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRP 567
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLL MLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK EL+AL++DE+++NVP LILGNKID   A SE++LR   GL   TTGKG V L + N RP
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARP 172          

HSP 2 Score: 34.6538 bits (78), Expect = 8.402e-46
Identity = 14/26 (53.85%), Postives = 21/26 (80.77%), Query Frame = 2
Query:  566 PLEVFMCNIVPPKWVTGKGFKWLSQY 643
            P+EVFMC+++  +   G+GF+WLSQY
Sbjct:  172 PMEVFMCSVLKRQGY-GEGFRWLSQY 196          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.015e-46
Identity = 101/190 (53.16%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   70 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK ELD+L++DE++ANVP LILGNKID P A SE+ LR   GL   TTGKG V+L + N RP   + V  C    + GY +G
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP---LEVFMCSVLKRQGYGEG 189          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.177e-45
Identity = 106/187 (56.68%), Postives = 122/187 (65.24%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCPP--KMGYRKG 621
            MF+ +WFY  LA LGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+W                   ER +ESK ELDALL+ E LA VPFLILGNKID P A SEDEL+  LGL   TTGKG V+     +RP   I V  C    + GY +G
Sbjct:    1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLYQ-TTGKG-VSKPVPGIRP---IEVFMCSVVLRQGYGEG 182          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.177e-45
Identity = 101/190 (53.16%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   70 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK ELD+L++DE++ANVP LILGNKID P A SE+ LR   GL   TTGKG V+L + N RP   + V  C    + GY +G
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP---LEVFMCSVLKRQGYGEG 189          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.177e-45
Identity = 100/190 (52.63%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   70 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK ELD+L++DE++ANVP LILGNKID P A SE+ LR   GL   TTGKG ++L + N RP   + V  C    + GY +G
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARP---LEVFMCSVLKRQGYGEG 189          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.177e-45
Identity = 101/190 (53.16%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   70 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK ELD+L++DE++ANVP LILGNKID P A SE+ LR   GL   TTGKG V+L + N RP   + V  C    + GY +G
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP---LEVFMCSVLKRQGYGEG 189          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.177e-45
Identity = 101/190 (53.16%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   70 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK ELD+L++DE++ANVP LILGNKID P A SE+ LR   GL   TTGKG V+L + N RP   + V  C    + GY +G
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARP---LEVFMCSVLKRQGYGEG 189          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.426e-45
Identity = 93/156 (59.62%), Postives = 104/156 (66.67%), Query Frame = 1
Query:   73 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKV 540
            LF WF  IL+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++ ELDAL   + L NVPF +LGNKID P A SE ELR  LGL N TTG  K+
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKI 160          

HSP 2 Score: 30.0314 bits (66), Expect = 2.426e-45
Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 2
Query:  566 PLEVFMCNIVPPKWVTGKGFKWLSQY 643
            P+E+FMC++V  K    + FKWLS+Y
Sbjct:  165 PIELFMCSVV-MKSGYSEAFKWLSEY 189          
The following BLAST results are available for this feature:
BLAST of FC925533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
SAR1_NEUCR5.285e-4655.85Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1B_MOUSE6.902e-4653.16GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1A_MOUSE8.402e-4653.53GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1B_RAT9.015e-4653.16GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1_SCHPO1.177e-4556.68Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
SAR1B_PIG1.177e-4553.16GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_HUMAN1.177e-4552.63GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR1.177e-4553.16GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1B_BOVIN1.177e-4553.16GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
SAR1_KLULA2.426e-4559.62Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG05FM1 TF Citrus clementina cDNA clone KN0AAP11YG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925533 ID=FC925533; Name=FC925533; organism=Citrus clementina; type=EST; length=644bp
TTATTTCAGCCAAAATTCGATCTTTTTGATAGATTCATTATAAATAAGGA
GTAATAAAAGAAACCCATGTTTTTGTTTGATTGGTTTTATGGGATTCTTG
CATCTCTTGGGCTCTGGCAAAAAGAGGCCAAGATCTTGTTTCTCGGCCTC
GATAATGCCGGTAAAACGACGCTGCTTCATATGTTGAAAGATGAGAGATT
AGTGCAACATCAACCAACACAACATCCCACTTCGGAGGAACTGAGTATTG
GGAAAATCAAGTTTAAGGCTTTTGATTTGGGAGGGCATCAGATTGCTCGT
AGAGTTTGGAAAGATTACTACGCCAAGGTTGATGCGGTTGTGTACCTGGT
AGATGCGTATGACAAGGAGAGGTTTGCTGAGTCGAAAAGGGAGCTTGATG
CCCTTCTTTCAGATGAATCCTTGGCCAATGTTCCATTCCTTATTTTGGGC
AACAAAATTGATATCCCATATGCTGCGTCAGAAGATGAGTTGCGATACCC
CCTTGGACTGACCAACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTG
ATTCCAACGTTCGCCCCCCTTGAGGTATTCATGTGCAACATTGTCCCCCC
AAAATGGGTTACCGGAAAGGGATTTAAGTGGCTGTCTCAGTACC
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