FC925542

Overview
NameFC925542
Unique NameFC925542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.154e-31
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 225
            VL  LPIGFAVFMVHLATIPITGTGINPARSLG AV+YN +KAW DQW+FWVGPFIGAAIAA YHQ ILRA A
Sbjct:  204 VLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRASA 276          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.561e-30
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 231
            VL  LPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN+ KAW D W+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  207 VLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRASAAK 281          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.039e-30
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 219
            +L  LPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  210 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.039e-30
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 219
            +L  LPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  209 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRA 279          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.543e-30
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 219
            +L  LPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  210 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.012e-29
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 219
            +L  LPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD AW+D W+FWVGPF+GAA+AA YHQ I+RA
Sbjct:  212 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRA 282          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.726e-29
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 219
            +L  LPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN+D AW+D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  212 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRA 282          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.255e-29
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 219
            +L  LPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN+D AW D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  215 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRA 285          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 3.846e-29
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 219
            +L  LPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN+  AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  211 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRA 281          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.846e-29
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 219
            +L  LPIGFAVF+VHLATIPITGTGINPARSLGAA+I+NKD AWDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  209 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRA 279          
The following BLAST results are available for this feature:
BLAST of FC925542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PIP24_ORYSJ9.154e-3184.93Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP23_ORYSJ1.561e-3082.67Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP15_ARATH2.039e-3081.69Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH2.039e-3081.69Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP14_ARATH4.543e-3080.28Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP11_ORYSJ1.012e-2980.28Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE1.726e-2980.28Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE2.255e-2980.28Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ3.846e-2978.87Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH3.846e-2978.87Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL11FM1 TF Citrus clementina cDNA clone KN0AAP8YL11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925542 ID=FC925542; Name=FC925542; organism=Citrus clementina; type=EST; length=527bp
CTCAAGGTTTTGCCTTCGCTCCCCATTGGATTTGCTGTGTTCATGGTACA
CTTGGCCACAATCCCAATCACTGGCACTGGCATTAACCCAGCAAGGAGTC
TCGGGGCCGCTGTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGG
CTCTTCTGGGTTGGACCCTTCATCGGTGCAGCAATTGCGGCTTTCTACCA
CCAATTCATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTCATTCAGGA
GCCAATCCCGTGTCTGATTTTAGTTTCGACAAGTGGATTATCCACATCTT
CATGGGGTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAAGGAGTAGA
GGTGTGTTAAGTTTCAAAAAGTGAATAATGAGGGGGGGTGTGATTTGTGC
TTTCAAGGAGTTGTAGGCAAAAAGTCTCTTAGACAATGAGGGGGCTTGCT
TTCTTGTAATCCCCTCTGTTGTTTTCAAGCACTTTCCTTAGAATTCACTT
CTTCAATGTTTCTGTCTCTTTCCACAT
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