FC925553

Overview
NameFC925553
Unique NameFC925553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURP0 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 1106a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.585e-44
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G     +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GYY+TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +   + K +   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFATRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYYDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLEISNASLLDEATAAAEAMTLLQRVGKPQSNVFYVADD 192
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURMS (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain SAVP1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.585e-44
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G     +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GYY+TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +   + K +   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFATRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYYDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLEISNASLLDEATAAAEAMTLLQRVGKPQSNVFYVADD 192
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURMA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei GN=gcvP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.585e-44
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G     +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GYY+TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +   + K +   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFATRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYYDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLEISNASLLDEATAAAEAMTLLQRVGKPQSNVFYVADD 192
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURM9 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain NCTC 10229) GN=gcvP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.585e-44
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G     +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GYY+TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +   + K +   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFATRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYYDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLEISNASLLDEATAAAEAMTLLQRVGKPQSNVFYVADD 192
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURM7 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain NCTC 10247) GN=gcvP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.585e-44
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G     +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GYY+TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +   + K +   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFATRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYYDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLEISNASLLDEATAAAEAMTLLQRVGKPQSNVFYVADD 192
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_MOUSE (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Mus musculus GN=Gldc PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.988e-44
Identity = 92/185 (49.73%), Postives = 130/185 (70.27%), Query Frame = 3 
Query:  282 GYGIGSQTRGIS-----VEALKPS-DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK 818
            G G G   RG +     +E L P  D F+RRH     +D+ +M + +GL ++D LI+ TVP SIR+   +  K ++ + E++++E +  +AS N++++S+IGMGYYN  VP  ILRN++EN  W TQYTPYQ E++QGRLESLLN+QTM++D+TGL M+NASLLDE TAAAEAM +C+   K KK
Sbjct:   41 GGGGGGGDRGAAGASRLLERLLPRHDDFSRRHIGPGDKDRREMLQALGLASIDELIEKTVPASIRLK--RPLKMEDPICENEILETLHAIASKNQIWRSYIGMGYYNCSVPQTILRNLLENSGWVTQYTPYQPEVSQGRLESLLNYQTMVSDITGLDMANASLLDEATAAAEAMQLCHRHNKRKK 223
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BDEBA (Glycine dehydrogenase [decarboxylating] OS=Bdellovibrio bacteriovorus GN=gcvP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.988e-44
Identity = 85/175 (48.57%), Postives = 122/175 (69.71%), Query Frame = 3 
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIA 836
            + +  L P++ F  RH   T  D  +M + +G ++LD + D  +P  IR  +  ++    G++E  ++ H++++ S NKVYK++IGMGY++T  P VI RNI ENP WYT YTPYQ EI+QGRLE+LLNFQTMIADL G+ ++NASLLDEGTAAAEAM M +++ K K   F+++
Sbjct:    1 MKIADLSPTNEFIPRHIGPTDSDIHEMLKTLGFNSLDQMADKVIPAQIRT-THAYADVGNGISEHGLLNHLKQMVSKNKVYKNYIGMGYHDTITPTVIQRNIFENPVWYTAYTPYQPEISQGRLEALLNFQTMIADLNGMEIANASLLDEGTAAAEAMFMAHSLCKNKANAFVVS 174
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_ALISL (Glycine dehydrogenase [decarboxylating] OS=Aliivibrio salmonicida (strain LFI1238) GN=gcvP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.988e-44
Identity = 87/175 (49.71%), Postives = 114/175 (65.14%), Query Frame = 3 
Query:  318 VEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            ++ L   + F RRHN         M   VG + L+ LI+ TVP SIR+      +   GL+E+ M+  ++++A  N +  S+IG GYYNTH P VILRN+ ENP WYT YTPYQ EI+QGRLE+LLN+Q M+ DLTGL ++NASLLDE TAAAEAM +C    K K  TF +A +
Sbjct:    5 LQQLGTDNEFIRRHNGPASSQHQHMLNTVGAETLEKLIEETVPSSIRLPQPM--QLPHGLSENAMLAELKQIAQQNTLNTSYIGQGYYNTHTPNVILRNVFENPGWYTAYTPYQPEISQGRLEALLNYQQMVMDLTGLDIANASLLDEATAAAEAMTLCKRGGKNKSSTFFVADD 177
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURCJ (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.334e-43
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G  +  +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GY++TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +     K K   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFASRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYHDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLAISNASLLDEATAAAEAMTLLQRTGKPKSNVFYVADD 192
[Close]
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURCH (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain HI2424) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.334e-43
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G  +  +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GY++TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +     K K   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFASRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYHDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLAISNASLLDEATAAAEAMTLLQRTGKPKSNVFYVADD 192
The following BLAST results are available for this feature:
BLAST of FC925553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSP_BURP04.585e-4449.44Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURMS4.585e-4449.44Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURMA4.585e-4449.44Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURM94.585e-4449.44Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURM74.585e-4449.44Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_MOUSE5.988e-4449.73Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_BDEBA5.988e-4448.57Glycine dehydrogenase [decarboxylating] OS=Bdellov... [more]
GCSP_ALISL5.988e-4449.71Glycine dehydrogenase [decarboxylating] OS=Aliivib... [more]
GCSP_BURCJ1.334e-4349.44Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCH1.334e-4349.44Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 TF Citrus clementina cDNA clone KN0AAP8YL15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925553 ID=FC925553; Name=FC925553; organism=Citrus clementina; type=EST; length=842bp
GTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAAGGAAAGAAGAAGACTTTTATTATTGCTAGCAAC
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