FC925553

Overview
NameFC925553
Unique NameFC925553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.291e-42
Identity = 88/168 (52.38%), Postives = 122/168 (72.62%), Query Frame = 3
Query:  333 PSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK--KKTFI 830
            P DTF RRH     +  A+M + +GL +++ LID  VP  IR+   K     +  TE +++++++ +AS N+V++S+IG GY++  +P VI RNI+ENP WYT YTPYQAEI+QGRLE+LLNFQTMI DLTGL +SNASLLDEGTAAAEAM +  +++K +  KK F+
Sbjct:   20 PLDTFPRRHIGPNLQQTAEMLKELGLSSVEELIDKAVPVGIRLK--KSLDLPKASTEHKILQNLKGIASQNQVFRSYIGAGYHSCIIPGVIQRNILENPGWYTAYTPYQAEISQGRLEALLNFQTMIIDLTGLEISNASLLDEGTAAAEAMFLAYSVRKNETAKKFFV 185          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_DECAR (Glycine dehydrogenase [decarboxylating] OS=Dechloromonas aromatica (strain RCB) GN=gcvP PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.291e-42
Identity = 89/177 (50.28%), Postives = 115/177 (64.97%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            + + AL+  D F  RH      + A M   +G D+L+ LID TVP +IR+ +           E + +  ++ +AS N V KS IGMGYY+T  P VILRN+MENP WYT YTPYQAEIAQGRLE+L+NFQ M+ DLTGL ++NASLLDE TAAAEAM M   + K K   F++ +N
Sbjct:    5 LPLSALEQHDEFIGRHIGPCSTEMATMLTAIGADSLEQLIDQTVPAAIRLPADL--PLPAPRREHEALADLKAMASKNVVNKSCIGMGYYDTLTPKVILRNVMENPGWYTAYTPYQAEIAQGRLEALMNFQQMVIDLTGLEIANASLLDEATAAAEAMTMARRVSKSKSNRFLVDAN 179          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_CHICK (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Gallus gallus GN=GLDC PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 4.291e-42
Identity = 84/178 (47.19%), Postives = 123/178 (69.10%), Query Frame = 3
Query:  285 YGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK 818
            +G G   R I  + L   D F RRH      ++ +M   VG+ +++ L+D T+P SIR+   +  + D+ + E++++E +  +AS NK+++S+IGMGYYN  VP  I RN++EN  W TQYTPYQ E++QGRLESLLN+QTM+ D+TG+ ++NASLLDEGTAAAEAM +C+   K +K
Sbjct:   34 WGGGEAARCIE-QLLPRHDDFCRRHIGPREREKREMLSAVGVQSVEELMDKTIPASIRL--RRPLRMDDHVVENEILETLYNIASKNKIWRSYIGMGYYNCSVPQPIARNLLENAGWVTQYTPYQPEVSQGRLESLLNYQTMVCDITGMDVANASLLDEGTAAAEAMQLCHRQNKRRK 208          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_ANAVT (Glycine dehydrogenase [decarboxylating] OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gcvP PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.291e-42
Identity = 86/166 (51.81%), Postives = 116/166 (69.88%), Query Frame = 3
Query:  339 DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIA 836
            + F +RH   +  D   M +++G  +LD LI+ TVP +IR+   K  +     TE   +  ++++AS N+V++S+IGMGYY+T  PPVI RNI+ENP WYT YTPYQ EIAQGRLE+LLNFQTMI DLTGL ++NASLLDE TAAAEAM+M   + K K   + ++
Sbjct:   32 NNFIQRHIGPSSADIQHMLDVLGFSSLDDLIEKTVPSTIRLH--KKLQLPTAQTEYAALAKLKQIASKNQVFRSYIGMGYYDTITPPVIGRNILENPGWYTAYTPYQPEIAQGRLEALLNFQTMIIDLTGLEIANASLLDEATAAAEAMSMSYGVSKNKANAYFVS 195          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_NITWN (Glycine dehydrogenase [decarboxylating] OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=gcvP PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.320e-42
Identity = 89/168 (52.98%), Postives = 114/168 (67.86%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            +P+ TFARRH   +  D A M E VG  +L++L++  +P SIR  +       EG +E++++ HMQ LA+ N+   S IG GY  T +P VI RNI+ENPAWYT YTPYQ EI+QGRLE+L NFQTMI DLTGL ++NASLLDE TAAAEAMA+       K K F +
Sbjct:    6 EPATTFARRHIGPSSRDIAAMLETVGAKSLEALMNEALPPSIRQKTPL--DLGEGFSETEVLTHMQALAAQNQPLTSLIGQGYSGTILPAVIQRNILENPAWYTAYTPYQPEISQGRLEALFNFQTMICDLTGLDVANASLLDEATAAAEAMALAERASSVKTKAFFV 171          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BRASB (Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=gcvP PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.320e-42
Identity = 93/176 (52.84%), Postives = 117/176 (66.48%), Query Frame = 3
Query:  327 LKPSD----TFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            LKP D    +FARRH   +P D A M E VG  ++  L+  T+P +IR  +      +  L+E + I HM+ LA+ N+V+ S IG GY  T +P VI RNI+ENPAWYT YTPYQ EI+QGRLE+L NFQTMI DLTGL ++NASLLDEGTAAAEAMA+     + K K F +  N
Sbjct:    5 LKPLDDAATSFARRHIGPSPRDVAAMLETVGAKSVAELMAQTLPGTIRQATPL--TLEPALSEVEAIGHMRALAAQNQVFTSLIGQGYSGTIMPAVIQRNILENPAWYTAYTPYQPEISQGRLEALFNFQTMICDLTGLDVANASLLDEGTAAAEAMALAERSARAKTKAFFVDRN 178          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_ANASP (Glycine dehydrogenase [decarboxylating] OS=Anabaena sp. (strain PCC 7120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.320e-42
Identity = 85/166 (51.20%), Postives = 116/166 (69.88%), Query Frame = 3
Query:  339 DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIA 836
            + F +RH   +  D  +M +++G  +LD LI+ TVP +IR+      +  E  TE   +  ++++AS N+V++S+IGMGYY+T  P VI RNI+ENP WYT YTPYQ EIAQGRLE+LLNFQTMI DLTGL ++NASLLDE TAAAEAM+M   + K K   + ++
Sbjct:   32 NNFIQRHIGPSSADIQQMLDVLGFSSLDDLIEKTVPSAIRLHEQL--QLPEAQTEYAALAKLKQIASKNQVFRSYIGMGYYDTITPSVIGRNILENPGWYTAYTPYQPEIAQGRLEALLNFQTMIIDLTGLEIANASLLDEATAAAEAMSMSYGVSKNKANAYFVS 195          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_STRMK (Glycine dehydrogenase [decarboxylating] OS=Stenotrophomonas maltophilia (strain K279a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.560e-42
Identity = 87/173 (50.29%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            S+  L+  + F  RH      + A+M ++VG  +LD++ DA VP  I+  S       E +TE Q +  ++ +A  N V +SFIG GYY TH P VILRNI+ENPAWYT YTPYQAEI+QGR+E+L+NFQT+ ADLTG+ ++NASLLDE TAAAEAM +     K K  TF +
Sbjct:    7 SLRELEHHNAFVERHIGPNDAEIAQMLDVVGHASLDAMTDAIVPAKIK--SPAPLALPESMTEVQALAKIRAIADKNTVLRSFIGQGYYGTHTPNVILRNILENPAWYTAYTPYQAEISQGRMEALINFQTLCADLTGMEIANASLLDEATAAAEAMTLAKRSAKSKSDTFFV 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_SCHPO (Putative glycine dehydrogenase [decarboxylating], mitochondrial OS=Schizosaccharomyces pombe GN=SPAC13G6.06c PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.560e-42
Identity = 88/178 (49.44%), Postives = 111/178 (62.36%), Query Frame = 3
Query:  339 DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDE----------GLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            DTF  RH   +  DQ    E +G  + DS +   +P S+R    +   F              +ES+       +A+ NK+ KSFIGMGYYN  +P  I RN++ENP WYTQYTPYQAEI+QGRLES++N+QTMIADLTGL +SNASLLDEGTAA EAM M     K K+KTF++  N
Sbjct:   47 DTFEPRHIGPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRTPESQLMAFGSVNPNEKNPPVNYSESEFTTLANNVANQNKLIKSFIGMGYYNVKLPAAIQRNVLENPEWYTQYTPYQAEISQGRLESMMNYQTMIADLTGLSISNASLLDEGTAAGEAMVMLMANDKKKRKTFLVDKN 224          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP2_COLP3 (Glycine dehydrogenase [decarboxylating] 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.560e-42
Identity = 83/166 (50.00%), Postives = 114/166 (68.67%), Query Frame = 3
Query:  345 FARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            F  RHN      Q  M + + +D+++ +ID TVP +IR+  ++     +  +E +M+  ++ +AS NKV +S+IG GYY+THVP VILRN+ ENP WYT YTPYQ EI+QGRLE+LLNFQ MI DLT + +SNASLLDE TAAAEAM++C    K K   F ++ +
Sbjct:   16 FISRHNGPDRTQQQHMLDTLKVDSIEQMIDKTVPDNIRL--LQPMALAKPQSEIEMLATLKGIASKNKVNRSYIGQGYYDTHVPHVILRNVFENPGWYTAYTPYQPEISQGRLEALLNFQQMITDLTAMELSNASLLDEATAAAEAMSLCKRASKNKSNVFFVSDD 179          
The following BLAST results are available for this feature:
BLAST of FC925553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSP_LEPIC4.291e-4252.38Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_DECAR4.291e-4250.28Glycine dehydrogenase [decarboxylating] OS=Dechlor... [more]
GCSP_CHICK4.291e-4247.19Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_ANAVT4.291e-4251.81Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_NITWN7.320e-4252.98Glycine dehydrogenase [decarboxylating] OS=Nitroba... [more]
GCSP_BRASB7.320e-4252.84Glycine dehydrogenase [decarboxylating] OS=Bradyrh... [more]
GCSP_ANASP7.320e-4251.20Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_STRMK9.560e-4250.29Glycine dehydrogenase [decarboxylating] OS=Stenotr... [more]
GCSP_SCHPO9.560e-4249.44Putative glycine dehydrogenase [decarboxylating], ... [more]
GCSP2_COLP39.560e-4250.00Glycine dehydrogenase [decarboxylating] 2 OS=Colwe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 TF Citrus clementina cDNA clone KN0AAP8YL15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925553 ID=FC925553; Name=FC925553; organism=Citrus clementina; type=EST; length=842bp
GTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAAGGAAAGAAGAAGACTTTTATTATTGCTAGCAAC
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