FC925598

Overview
NameFC925598
Unique NameFC925598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 3
Query:  279 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELI 590
            KKR+LTAEQ ++LE  F  E+KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  LK A       H  ++ +  RL ++V +L EKL   +KE    S  I
Sbjct:   86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQ--DKETSPSSATI 194          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 3
Query:  279 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELI 590
            KKR+LTAEQ ++LE  F  E+KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  LK A       H  ++ +  RL ++V +L EKL   +KE    S  I
Sbjct:   86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQ--DKETSPSSATI 194          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.210e-19
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  255 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKL 548
            G GG    KKR+L+ EQ   LE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  YA L+ +       H+ +  +K  L +E+  LK KL
Sbjct:   35 GRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.210e-19
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  255 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKL 548
            G GG    KKR+L+ EQ   LE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  YA L+ +       H+ +  +K  L +E+  LK KL
Sbjct:   35 GRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.203e-18
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  153 SQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKL 548
            + + P D  T TG V    E  K     R  N N       +KK++LT+ Q   LE  F  E KL+SDRK KL+ ELGL PRQ+AVWFQNRRAR K K++E+ Y +L+  ++ V  EK  L  EV  L+  L
Sbjct:   42 NSYTPGD--TQTGPVISVPESEKIMNAYRFPNNNNE----MIKKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRALL 167          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSJ (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. japonica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  255 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVE-------KTRLESEVATLKEKL 548
            G GG    KKR+L AEQ   LE  F  ++KL+ +RK ++A +L L PRQVAVWFQNRRAR KTK+IE  +A L++ H+ + +E       K  L +E+A L++++
Sbjct:   57 GGGGGLGEKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDRV 161          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSI (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. indica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  255 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVE-------KTRLESEVATLKEKL 548
            G GG    KKR+L AEQ   LE  F  ++KL+ +RK ++A +L L PRQVAVWFQNRRAR KTK+IE  +A L++ H+ + +E       K  L +E+A L++++
Sbjct:   33 GGGGGLGEKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDRV 137          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 52/109 (47.71%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  255 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVV-------EKTRLESEVATLKEKLSVAE 560
            G GG    KKR+L+ EQ   LE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  YA L+ +++++ +       +K  L +E+  LK KL   E
Sbjct:   46 GGGGE---KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEE 151          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 52/109 (47.71%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  255 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVV-------EKTRLESEVATLKEKLSVAE 560
            G GG    KKR+L+ EQ   LE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  YA L+ +++++ +       +K  L +E+  LK KL   E
Sbjct:   46 GGGGE---KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEE 151          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSJ (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. japonica GN=HOX13 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.737e-17
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  279 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVV-------EKTRLESEVATLKEKL 548
            KKR+L  EQ   LE  F  ++KL+ DRK ++A +LGL PRQVAVWFQNRRAR KTK++E  +A L+  H+ +         +K  L +E+  L+EKL
Sbjct:   72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRELREKL 168          
The following BLAST results are available for this feature:
BLAST of FC925598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HOX5_ORYSJ4.134e-1948.65Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI4.134e-1948.65Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX20_ORYSJ9.210e-1949.52Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI9.210e-1949.52Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
ATB51_ARATH1.203e-1843.94Putative homeobox-leucine zipper protein ATHB-51 O... [more]
HOX8_ORYSJ1.018e-1745.71Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX8_ORYSI1.018e-1745.71Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX4_ORYSJ1.330e-1747.71Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI1.330e-1747.71Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX13_ORYSJ1.737e-1747.42Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH07FM1 TF Citrus clementina cDNA clone KN0AAP11YH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925598 ID=FC925598; Name=FC925598; organism=Citrus clementina; type=EST; length=638bp
CACATTACCAATTTATCATATCCATATATATATATATATTCACACACACA
CACACACACACACATATTTGAGAGAGATTTATGATCAGAGAAATGATCGT
AACAAACACGAATCATCAAGTTGAAGATAACAAAAGTAATATGGTCTTGC
TTTCCCAGTTTTACCCTTCTGATGTTCTCACACCAACTGGAATCGTTCCA
CAACAAGGGGAGCCGTCTAAGCCGAAGCGCAGGCAACGCAAACGGAATAC
TAACGGAAACGGTGGCTTTCGTGCTTTGAAGAAGAGAAAGCTGACGGCTG
AACAAGCTGAGCTTCTTGAGATGCATTTTGGCAACGAACACAAGCTTGAA
TCTGACAGAAAAGACAAGCTCGCTGCTGAGCTCGGACTCGACCCTCGTCA
AGTGGCCGTGTGGTTTCAGAACCGGAGGGCTCGTGATAAGACTAAGAAGA
TTGAGGAGACCTACGCTACCTTGAAGACCGCTCATGAAAATGTCGTCGTG
GAGAAAACCCGACTCGAGTCTGAGGTGGCAACGCTGAAAGAGAAGCTTTC
CGTTGCCGAGAAGGAGATTAAGAAAATGTCAGAGCTCATTGAAGGGATTT
CACTCCATAATCCGAGTGCCACGATCCCCACGGACATG
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