FC925600

Overview
NameFC925600
Unique NameFC925600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: GDL44_ARATH (GDSL esterase/lipase At2g31550 OS=Arabidopsis thaliana GN=At2g31550 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 56/153 (36.60%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  134 AKAAPQVPCYFIFGDSLVDNGNNNQ-LSSLARANYLPYGIDFPNGPT-GRFSNGKTTVDVIAQLLGFDGYIPPYSAAR--GQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSNHY 580
            A   P  P   IFGDS VD GNNN  L ++ RA + PYG+D P+G   GRFSNGK   D+IA  L    +IPP+       QDIL GV +ASA AG  + T       I  S Q   +++ + ++  ++G++ +A   ++     +  G N +
Sbjct:   27 ATTKPLFPAILIFGDSTVDTGNNNYPLPTIFRAEHFPYGMDLPDGKANGRFSNGKLISDIIATKLNIKEFIPPFLQPNLSDQDILTGVCFASAGAGYDDLTSLST-QAIRVSEQPNMFKSYIARLKGIVGDK-KAMEIINNAFVVVSAGPNDF 177          
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: GDL43_ARATH (GDSL esterase/lipase At2g31540 OS=Arabidopsis thaliana GN=At2g31540 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 56/153 (36.60%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  134 AKAAPQVPCYFIFGDSLVDNGNNNQ-LSSLARANYLPYGIDFPNGPT-GRFSNGKTTVDVIAQLLGFDGYIPPYSAAR--GQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSNHY 580
            A   P  P   IFGDS VD GNNN  L ++ RA + PYG+D P+G   GRFSNGK   D+IA  L    +IPP+       QDIL GV +ASA AG  + T       I  S Q   +++ + ++  ++G++ +A   ++     +  G N +
Sbjct:   27 ATTKPLFPAILIFGDSTVDTGNNNYPLPTIFRAEHFPYGMDLPDGKANGRFSNGKLISDIIATKLNIKEFIPPFLQPNLSDQDILTGVCFASAGAGYDDLTSLST-QAIRVSEQPNMFKSYIARLKGIVGDK-KAMEIINNAFVVVSAGPNDF 177          
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: GDL39_ARATH (GDSL esterase/lipase At2g24560 OS=Arabidopsis thaliana GN=At2g24560 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  134 AKAAPQVPCYFIFGDSLVDNGNNNQLS-SLARANYLPYGIDFPN-GPTGRFSNGKTTVDVIAQLLGFDGYIPPYSAAR--GQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSNHY 580
            A + P  P   IFGDS VD GNNN  S ++ +A +LPYGID PN   +GRF+NGK   D+IA  L    ++PP+       Q+I+ GV +ASA AG  + T       I    Q K ++N + ++ +++G++ +A   +   +  I  G N +
Sbjct:   26 ATSQPLFPAILIFGDSTVDTGNNNYHSQTIFKAKHLPYGIDLPNHKASGRFTNGKIFSDIIATKLNIKQFVPPFLQPNLSDQEIVTGVCFASAGAGYDDHTSLST-QAIRVLDQQKMFKNYIARLKSIVGDK-KAMEIIKNALVVISAGPNDF 176          
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: GDL42_ARATH (GDSL esterase/lipase At2g30310 OS=Arabidopsis thaliana GN=At2g30310 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.186e-17
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 2
Query:   86 VMVLLVLINIQNYYYGAKAAPQVPCYFIFGDSLVDNGNNNQLS-SLARANYLPYGIDFP-NGPTGRFSNGKTTVDVIAQLLGFDGYIPPYSAAR--GQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSNHY 580
            V  LLV  N+      A   P  P   IFGDS VD GNNN  S ++ +A +LPYG+D P +   GR+SNGK   DVIA  L     +PP+       QDI+ GV++ASA AG  + +       I  S Q   ++N + ++  ++G++ +A   ++  +  I  G N +
Sbjct:   13 VATLLVSCNVAA---NATTQPLFPAILIFGDSTVDTGNNNYHSQTIFKAKHLPYGVDLPGHEANGRYSNGKVISDVIASKLNIKELVPPFLQPNISHQDIVTGVSFASAGAGYDDRSSLS-SKAIPVSQQPSMFKNYIARLKGIVGDK-KAMEIINNALVVISAGPNDF 176          
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: GDL5_ARATH (GDSL esterase/lipase At1g23500 OS=Arabidopsis thaliana GN=At1g23500 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 54/164 (32.93%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   92 VLLVLINIQNYYYGAKAAPQVPCYFIFGDSLVDNGNNNQLSSLARANYLPYGIDFPNG-PTGRFSNGKTTVDVIAQLLGFDGYIPPYSAAR--GQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSN 574
            V L  +     + G+ A   V   F FGDS++D GNNN L++L++ N+ PYG +F  G  TGRF NG+   D+IA+ L     +P Y        D+  GV +AS  +G+ E T R  G  I    QVK+++  + ++  ++ ++ +    +S  +Y I  G+N
Sbjct:   16 VCLFFVGYAQQFSGSVA---VSALFAFGDSILDTGNNNNLNTLSKCNFFPYGRNFIGGKATGRFGNGRVFSDMIAEGLNVKKLLPAYRDPNLSKNDLPTGVCFASGGSGLDERTARSQG-VIWVPDQVKDFKEYIMKLNGVVRDKRKVNAIISNAVYLISAGNN 175          
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: GDL56_ARATH (GDSL esterase/lipase At3g43570 OS=Arabidopsis thaliana GN=At3g43570 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 55/174 (31.61%), Postives = 93/174 (53.45%), Query Frame = 2
Query:   62 MDLRKWWVVMVLLVLINIQNYYYGAKAAPQVPCYFIFGDSLVDNGNNNQLSSLARANYLPYGIDFPNG-PTGRFSNGKTTVDVIAQLLGFDGYIPPY--SAARGQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSN 574
            M ++  W+ +VL+V +       G  A   +P   +FGDS++D GNNN L +L + N+ PYG D+P G  TGRFS+G+   D+IA+ +G    +P Y     + +D+L+GV +AS   G    T + +   IS   Q+  ++  + ++    G E++A + L    + +   SN
Sbjct:    1 MKIQIIWLTLVLIV-VEANAVKQGKNAT--IPALIVFGDSIMDTGNNNNLPTLLKCNFPPYGKDYPGGFATGRFSDGRVPSDLIAEKIGLAKTLPAYMNPYLKPEDLLKGVTFASGGTGYDPLTAK-IMSVISVWDQLIYFKEYISKIKRHFG-EEKAKDILEHSFFLVVSSSN 169          
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: GDL34_ARATH (GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana GN=At2g04570 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 52/149 (34.90%), Postives = 75/149 (50.34%), Query Frame = 2
Query:  143 APQVPCYFIFGDSLVDNGNNNQLSSLARANYLPYGIDFPNG-PTGRFSNGKTTVDVIAQLLGFDGYIPPY--SAARGQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSNHY 580
            A ++P   +FGDS VD GNNN + ++AR+N+ PYG DF  G PTGRF NGK   D +++ LG    IP Y   +    D   GV +ASAA G    T   L   +    +   Y    Q  +     +D+    +   +Y I +G+N +
Sbjct:   23 AGKIPAIIVFGDSSVDAGNNNYIPTVARSNFEPYGRDFVGGKPTGRFCNGKIATDFMSEALGLKPIIPAYLDPSYNISDFATGVTFASAATGYDNATSDVLS--VLPLWKQLEYYKEYQTKLKAYQGKDRGTETIESSLYLISIGTNDF 169          
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: GLIP5_ARATH (GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=GLIP5 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.211e-16
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 2
Query:  152 VPCYFIFGDSLVDNGNNNQLSS--LARANYLPYGIDFPNGPTGRFSNGKTTVDVIAQLLGFDGYIPPY-SAARGQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSNHY 580
            V   F+FGDS +D GNNN +++  L +AN+ PYG  F   PTGRFS+G+   D IA+       IPP+      Q  L GVN+ASA AG   ET +  G  I+   Q+ +Y+  V+++      ++++   +SR +Y I +GSN Y
Sbjct:   46 VTALFLFGDSFLDAGNNNYINTTTLDQANFPPYGQTFFGLPTGRFSDGRLISDFIAEYANLP-LIPPFLEPGNSQKKLYGVNFASAGAGALVETFQ--GSVINLRTQLDHYKK-VERLWRTNFGKEESKKRISRAVYLISIGSNDY 187          
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: EXL3_ARATH (GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.697e-16
Identity = 49/149 (32.89%), Postives = 84/149 (56.38%), Query Frame = 2
Query:   80 WVVMVLLVLINIQNYYYGAKAAPQ--VPCYFIFGDSLVDNGNNNQLSSLARANYLPYGIDFPNG-PTGRFSNGKTTVDVIAQLLGFDGYIPPY--SAARGQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLG 511
            W + +L VL  +       K  P+  +P    FGDS+VD G NN + ++ + ++LPYGI+F +G  TGRF +G+   D++A+ LG    +P Y     + +D+L GV++AS  +G    T + L   IS   Q+  ++  +++V N++G
Sbjct:   16 WKICLLSVLF-LTETITAVKLPPKLIIPAVIAFGDSIVDTGMNNNVKTVVKCDFLPYGINFQSGVATGRFCDGRVPADLLAEELGIKSIVPAYLDPNLKSKDLLTGVSFASGGSGYDPITPK-LVAVISLEDQLSYFEEYIEKVKNIVG 162          
BLAST of FC925600 vs. ExPASy Swiss-Prot
Match: APG_BRANA (Anther-specific proline-rich protein APG (Fragment) OS=Brassica napus GN=APG PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.697e-16
Identity = 51/150 (34.00%), Postives = 80/150 (53.33%), Query Frame = 2
Query:  152 VPCYFIFGDSLVDNGNNNQLSSLARANYLPYGIDFPNG-PTGRFSNGKTTVDVIAQLLGFDGYIPPY--------SAARGQDILRGVNYASAAAGIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSN 574
            +P  F FGDS+ D GNNN L +  + NY PYG+DFP G  TGRFSNG+   D I++ LG    +P Y        +  +  D+L GV++AS  AG   +T  +     +   Q+  +Q+  +++  L+G + +    +S+    +  GSN
Sbjct:  123 IPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVKEIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTS-ESWKVTTMLDQLTYFQDYKKRMKKLVGKK-KTKKIVSKGAAIVVAGSN 270          
The following BLAST results are available for this feature:
BLAST of FC925600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GDL44_ARATH2.440e-1736.60GDSL esterase/lipase At2g31550 OS=Arabidopsis thal... [more]
GDL43_ARATH2.440e-1736.60GDSL esterase/lipase At2g31540 OS=Arabidopsis thal... [more]
GDL39_ARATH2.440e-1735.95GDSL esterase/lipase At2g24560 OS=Arabidopsis thal... [more]
GDL42_ARATH3.186e-1734.91GDSL esterase/lipase At2g30310 OS=Arabidopsis thal... [more]
GDL5_ARATH4.161e-1732.93GDSL esterase/lipase At1g23500 OS=Arabidopsis thal... [more]
GDL56_ARATH4.161e-1731.61GDSL esterase/lipase At3g43570 OS=Arabidopsis thal... [more]
GDL34_ARATH4.161e-1734.90GDSL esterase/lipase At2g04570 OS=Arabidopsis thal... [more]
GLIP5_ARATH1.211e-1638.36GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=... [more]
EXL3_ARATH2.697e-1632.89GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana ... [more]
APG_BRANA2.697e-1634.00Anther-specific proline-rich protein APG (Fragment... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YH08FM1 TF Citrus clementina cDNA clone KN0AAP11YH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925600 ID=FC925600; Name=FC925600; organism=Citrus clementina; type=EST; length=581bp
TCAATTTTGATCTTTCCTCATCTCATCTGGGTTTTAGAATTTGTTTCCTC
TTTCGGGCTTGATGGATTTAAGAAAATGGTGGGTGGTGATGGTGTTGTTG
GTTTTGATCAATATACAGAATTATTATTATGGGGCTAAAGCAGCGCCTCA
AGTGCCTTGCTACTTCATATTTGGGGATTCATTGGTGGATAACGGGAATA
ATAATCAACTATCTTCATTGGCTAGAGCTAATTATTTGCCTTATGGAATT
GACTTCCCTAATGGTCCTACAGGAAGATTTTCCAATGGCAAAACTACCGT
CGATGTCATTGCCCAACTTCTGGGCTTCGACGGTTACATTCCTCCATATT
CGGCTGCAAGAGGTCAGGATATACTCAGAGGAGTCAATTATGCATCTGCA
GCTGCTGGTATCAGGGAGGAAACTGGTCGACAGCTGGGAGATCGAATCAG
TTTTAGTGGGCAGGTAAAGAATTACCAAAACACGGTTCAGCAAGTAGTGA
ACTTACTAGGAAATGAAGATCAAGCTGCAAATTACCTGAGCCGATGCATA
TACTCAATCGGATTAGGCAGCAACCACTACC
back to top