FC925607

Overview
NameFC925607
Unique NameFC925607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.459e-57
Identity = 101/141 (71.63%), Postives = 123/141 (87.23%), Query Frame = 1
Query:   16 GDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 438
            GDNVGFNVKNVSVK+++RG VA +SK+DP KG  +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E++ KIDRR+GK +E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV K D
Sbjct:  304 GDNVGFNVKNVSVKEVRRGNVAGDSKNDPPKGCESFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSD 444          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.436e-57
Identity = 106/148 (71.62%), Postives = 124/148 (83.78%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 447
            EA+ GDNVGFNVKNVSVK+L+RGYVA +SK +P KGA NFT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRRSGK  E  PK +K+GDA  V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIKSV  KD +G
Sbjct:  250 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.436e-57
Identity = 105/148 (70.95%), Postives = 123/148 (83.11%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 447
            EAL GDNVGFNVKN+SVK+L+RGYVA +SK+ P +GA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K DRR+GK  E+ PK +K+GDA  V + PTKPM VE F E+PPLGRFAVRDMRQTVAVGVIKSV  KD  G
Sbjct:  301 EALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDTQG 448          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.436e-57
Identity = 108/144 (75.00%), Postives = 123/144 (85.42%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 435
            EAL GDNVGF VKNVSVKD++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCH +HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  301 EALPGDNVGFKVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHMAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.436e-57
Identity = 106/144 (73.61%), Postives = 124/144 (86.11%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 435
            EAL GDNVGFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  301 EALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.436e-57
Identity = 106/144 (73.61%), Postives = 124/144 (86.11%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 435
            EAL GDNVGFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  301 EALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.436e-57
Identity = 106/144 (73.61%), Postives = 124/144 (86.11%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 435
            EAL GDNVGFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  301 EALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.102e-56
Identity = 102/149 (68.46%), Postives = 129/149 (86.58%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 447
            ++A+ GDNVGFNVKNVSVKD+KRG+VAS+SK+DPAK A++F +QVI+++HPGQI  GY+PV+DCHT+HIA KFA +  ++DRRSGK LE +PKF+K GDA  +KM P+KPM VE+F EYPPLGRFAVRDM+QTVAVGVIK V+KK+  G
Sbjct:  185 EQAVPGDNVGFNVKNVSVKDVKRGHVASDSKNDPAKAAASFQAQVIVLHHPGQINPGYSPVVDCHTAHIACKFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.439e-56
Identity = 106/144 (73.61%), Postives = 124/144 (86.11%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 435
            EAL GDNVGFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  301 EALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.439e-56
Identity = 106/144 (73.61%), Postives = 124/144 (86.11%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 435
            EAL GDNVGFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  301 EALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
The following BLAST results are available for this feature:
BLAST of FC925607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_AJECG6.459e-5771.63Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_RHYAM8.436e-5771.62Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_APIME8.436e-5770.95Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A3_HUMAN8.436e-5775.00Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A2_RABIT8.436e-5773.61Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_HUMAN8.436e-5773.61Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN8.436e-5773.61Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A_EIMBO1.102e-5668.46Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A2_RAT1.439e-5673.61Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_MOUSE1.439e-5673.61Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YL02FM1 TF Citrus clementina cDNA clone KN0AAP3YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925607 ID=FC925607; Name=FC925607; organism=Citrus clementina; type=EST; length=634bp
CAGGAGGCACTTCTTGGTGATAATGTGGGGTTCAACGTTAAGAATGTTTC
AGTGAAGGATCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATC
CCGCCAAGGGGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCAC
CCTGGCCAGATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTC
CCACATAGCTGTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGAT
CTGGTAAGGAGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCT
GGGTTTGTTAAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTC
CGAATATCCCCCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCG
TCGCTGTTGGAGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCC
AAGGTAACCAAGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTT
GTCTGCAAGTAATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTT
TTAGGCATAAATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
TACAATTCGTCCCCATCGACAAGAGACTTTTTGT
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