FC925607

Overview
NameFC925607
Unique NameFC925607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.031e-54
Identity = 103/145 (71.03%), Postives = 120/145 (82.76%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 438
            EA+ GDNVGFN+K VSVKD++RG VAS++K+DPAK A+ F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  I  KIDRR+GK  E+ PKF+KNGDA  V +IPTK + VE F EYPPLGR+AVRDM+QTVAVGVIK V+KKD
Sbjct:  290 EAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.031e-54
Identity = 97/146 (66.44%), Postives = 125/146 (85.62%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 438
            +EA  GDN+GFNVKNVSVK++KRGYVAS++K++PAKG S FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  I +KID+RSGK +E+ PK +K+GD+  V + P KPMVVETF+EYPPLGRFA+RDMRQT+AVG+I  + +K+
Sbjct:  286 EEARPGDNIGFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.000e-54
Identity = 100/141 (70.92%), Postives = 120/141 (85.11%), Query Frame = 1
Query:   16 GDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 438
            GDNVGFNVKNVSVKD++RG V  ++K DP K A++F +QVI++NHPGQIGNGY PVLDCHT+HIA KF  +  KIDRR+GK LE+ PKF+K+GDA  VKM+P+K M VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K D
Sbjct:  302 GDNVGFNVKNVSVKDIRRGNVCGDTKCDPPKEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.390e-53
Identity = 95/142 (66.90%), Postives = 124/142 (87.32%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELE-KEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 426
            +A+ GDNVGFNV+N++VKD+KRG VAS++K+ PA G  +FT+QVI+MNHPGQI  GY PVLDCHTSHIA KF E+L+KIDRR+GK +E  EP+++KNGD+  VK++PTKP+ VE F+++PPLGRFAVRDM+QTVAVGV+K+V
Sbjct:  287 QAIPGDNVGFNVRNLTVKDIKRGNVASDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.171e-52
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 435
            EA  G+NVGFNVK +SVKD+KRG+VAS+SK+DPA    +F S  I+MNHPG+I  GY PV+DCHT+HIA KF E+LTK D+RSGK  E+ PKFLK GDAG +++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ + KK
Sbjct:  289 EAAPGNNVGFNVKGLSVKDIKRGFVASDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.541e-50
Identity = 99/152 (65.13%), Postives = 119/152 (78.29%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKE---PKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            EA  GDNVGFNVKNVSVK++KRG VA +SK+DP +    F +QVI++NHPGQI  GY+PVLDCHT+HIA KF EI+ K+DRR+G  + KE      LKNGDA  V++ P++PM VE+F+EYPPLGRFAVRDMRQTVAVGVIKS  KK P  A
Sbjct:  289 EARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKA 440          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.795e-49
Identity = 88/128 (68.75%), Postives = 110/128 (85.94%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 384
            QEA+ GDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  286 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.795e-49
Identity = 88/128 (68.75%), Postives = 110/128 (85.94%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 384
            QEA+ GDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  286 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.795e-49
Identity = 88/128 (68.75%), Postives = 110/128 (85.94%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 384
            QEA+ GDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  286 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.795e-49
Identity = 88/128 (68.75%), Postives = 110/128 (85.94%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 384
            QEA+ GDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  286 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of FC925607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_TETPY1.031e-5471.03Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_PLAFK1.031e-5466.44Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_PUCGR3.000e-5470.92Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A_ENTHI7.390e-5366.90Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A1_EUPCR8.171e-5265.97Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_DICDI1.541e-5065.13Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_SPOFR3.795e-4968.75Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE3.795e-4968.75Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI3.795e-4968.75Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL3.795e-4968.75Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YL02FM1 TF Citrus clementina cDNA clone KN0AAP3YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925607 ID=FC925607; Name=FC925607; organism=Citrus clementina; type=EST; length=634bp
CAGGAGGCACTTCTTGGTGATAATGTGGGGTTCAACGTTAAGAATGTTTC
AGTGAAGGATCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATC
CCGCCAAGGGGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCAC
CCTGGCCAGATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTC
CCACATAGCTGTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGAT
CTGGTAAGGAGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCT
GGGTTTGTTAAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTC
CGAATATCCCCCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCG
TCGCTGTTGGAGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCC
AAGGTAACCAAGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTT
GTCTGCAAGTAATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTT
TTAGGCATAAATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
TACAATTCGTCCCCATCGACAAGAGACTTTTTGT
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