FC925658

Overview
NameFC925658
Unique NameFC925658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 55/159 (34.59%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  130 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 600
            GACG+ +          + G   ++KDG GCG+C+Q+RC N   CSG    VI+TD+N+   ++  F +S  AF A++  G+   +   G++D+++KRVPC +    +   VEE S  P Y AV V Y+ G  ++V +D+ +  S +W  M  ++G++W
Sbjct:   63 GACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPACSGNPETVIITDMNYYPVSKYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGS-NPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIW 220          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.479e-25
Identity = 56/169 (33.14%), Postives = 98/169 (57.99%), Query Frame = 1
Query:  103 FSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYK-NQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 600
            +   S  + GACG  ++ L    G ++ G   ++KDG GCG+C++++C+ P  CS +   V +TD+N+   +   F  S +AF A++  GK  ++ K G++D++++RV C+Y   Q +   VE+ S  PNYLAV V +     +++ MD+ + G   W  M  ++GA+W
Sbjct:   55 YGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKCEQPAACSKQPVTVFITDMNYEPISAYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGS-NPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIW 222          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.479e-25
Identity = 57/176 (32.39%), Postives = 95/176 (53.98%), Query Frame = 1
Query:  124 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQT--DFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFR 639
            + GACGY  +  +   G  + G   ++KDG GCG+CF+++C  P  CS K   + +TD+N        F +S  AF A++  GK +++ K G++D +++RV C+Y          E +  PNYLA+ V Y  G  ++V +++ + GS  W  +  ++GA+W  DT +   G    R
Sbjct:   60 NGGACGYKDVDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKPEACSDKPALIHVTDMNDEPIAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIKEKGSEEWKALKESWGAIWRIDTPKPLKGPFSVR 235          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 57/177 (32.20%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  124 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRF 642
            + GACGY ++  +   G    G   ++KDG GCG+CF+++C  P  CSG+   V +TD N        F +S  AF +++ +G+ Q++   G ++++++RV C+Y +        E +  PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GAVW  DT     G    R+
Sbjct:   60 NGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKCTKPESCSGEAVTVTITDDNEEPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAVWRIDTPDKLTGPFTVRY 236          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.229e-25
Identity = 65/180 (36.11%), Postives = 99/180 (55.00%), Query Frame = 1
Query:  130 GACGY-GSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH-----SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGS-SNWGYMSRNYGAVWDTSRVPNGALQFRFVV 648
            GACGY G++  +     +AAG PS+YK G GCG+C+Q++C   + CSG    V+LTD        S    F +S  AF A++N G+   +   GV+ ++Y RVPC +    L   V+  S  PNY AV V Y+ G  ++  +++ Q G+ + W  M +++GAVW  +     ALQ  F +
Sbjct:   56 GACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVTVVLTDECPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVKLTFVVDVGS-NPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLN--AGSALQAPFSI 232          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 63/181 (34.81%), Postives = 94/181 (51.93%), Query Frame = 1
Query:  124 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTS 654
            + GACG  ++ L    G  A G   ++KDG GCG+C+++RCK    CSG    V +TD+N+       F +S +AF +L+  G    I   G++DVE++RV C+Y      V   E    PNYLAV V Y     ++V M++    S+ W  M  ++GA+W  DT++   G    R    S
Sbjct:   62 NGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSES 242          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 62/167 (37.13%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  130 GACGY-GSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH-----SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGS-SNWGYMSRNYGAVWDTS 609
            GACGY  ++  +     +AAG PS+YK G GCG+C+Q++C   + CSG    V+LTD        S    F +S  AF A++N G+   +   GV+ ++Y RVPC +    L   V+  S  P+Y AV V Y+ G  ++  MD+ Q G+ + W  M +++GAVW  S
Sbjct:   56 GACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVTVVLTDECPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVMLTFAVDAGS-NPSYFAVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLS 221          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 60/166 (36.14%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  115 SALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDV--AQVGSSNWGYMSRNYGAVW 600
            +A + GACG+  +      G  + G   LYK G GCG+C+++RC     CSG    V +TD+N+   +Q  F +S  AF  L+  G+  D+ + G++DV++ RVPCE+    +   VEE S  P YLAV V Y+ G  ++  +D+  A  G   W  M  ++G+VW
Sbjct:   64 AADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPACSGNAQTVAITDMNYFPLSQYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGS-SPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVW 228          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 1
Query:  109 QASALSSGACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-------LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQV-GSSNWGYMSRNYGAVW 600
            Q      GACGY S +        +AAG PSL+K+G GCG+C+Q++C     CSG+   V++TD       LN +    F +S  AF A++N+G G  +   GV+ ++YKRVPC +   N+A +V+  S  P YLA+ V Y  G  ++ A+ + +  G   W  M +++GA W
Sbjct:   57 QGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGNRACSGRPVTVVITDSCPGGVCLNEA--AHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFA-MNVAFKVDAGS-NPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATW 225          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.741e-24
Identity = 64/181 (35.36%), Postives = 97/181 (53.59%), Query Frame = 1
Query:  106 SQASALSSGACGY-GSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH-----SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSS----NWGYMSRNYGAVWDTSRVP 618
            +  S    GACGY G +        +AAG PS+Y+ G GCG+C+Q++C     CSGK   V+LTDL            F +S  AF A++  G+   +   G + V+Y RVPC+++  ++A RV+  S    YLAV V  + G  ++ A+D+ Q G S    +W  M +++GAVW  +  P
Sbjct:   49 ANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPSCSGKPVTVVLTDLCPGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGS-NQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNSGP 228          
The following BLAST results are available for this feature:
BLAST of FC925658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
EXPB3_ORYSJ1.898e-2534.59Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB9_ORYSJ2.479e-2533.14Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB1_ORYSJ2.479e-2532.39Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAL1_LOLPR3.238e-2532.20Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
EXB15_ORYSJ4.229e-2536.11Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB1_MAIZE7.213e-2534.81Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXB18_ORYSJ7.213e-2537.13Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB8_ORYSJ9.421e-2536.14Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB5_ORYSJ1.230e-2436.42Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB14_ORYSJ2.741e-2435.36Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI07FM1 TF Citrus clementina cDNA clone KN0AAP11YI07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925658 ID=FC925658; Name=FC925658; organism=Citrus clementina; type=EST; length=670bp
TCTTTCTCATTAATAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTCTCTT
CTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTTGCTT
ATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGGTTCA
TTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTTCCCT
TTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGCAAGA
ACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGATCTC
AATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCATGGC
CTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTTGTCG
ATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTTGGCT
GTGCGTGTGGAAGAATCCAGTCCAAAACCAAATTATTTAGCAGTTAAAGT
GTTGTATCAGGGTGGTCAAACAGAAATGGTAGCCATGGATGTAGCTCAGG
TTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGTTTGG
GATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGGTAAC
ATCACGCTATGATGGCAAGT
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