FC925663

Overview
NameFC925663
Unique NameFC925663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12
Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  150 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSP 458
            P    CPISL +M DPV + +G TY+R  IEKW F+  +N+CP T+Q L     LTPN+ ++ LI SWC  N   GI  +PT  P        +L    ++SP
Sbjct:  276 PEELRCPISLQLMYDPVIIASGQTYERVCIEKW-FSDGHNSCPKTQQQL-PHLSLTPNYCVKGLIASWCEQN---GI-TVPTGPPESLDLNYWRLAMSDSESP 372          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  165 CPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLN----ASYGIERIPTPK----PPINKAQITKLLNEAAKSPQMQ-IKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSN 581
            CPISL IM DPV + +G TYDR SI KW FA  N TCP T + L S   L  N +++++IQS+   N       G +++   +        K     L  E  K  + + +K L ++R +   +   + CL  AG VE L   + + +
Sbjct:  284 CPISLEIMSDPVVLESGHTYDRSSITKW-FASGNITCPKTGKTLVSTV-LVDNFSVKQVIQSYSKQNGVVMGQKGKKKVDVAESLAAEEAGKLTAEFLAGELIKGDEEEMVKALVEIRILTKTSTFYRSCLVEAGVVESLMKILRSDD 429          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.745e-11
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  144 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNAS 371
            D+P+ F+CPI   +MK+P     G +Y+ E+I++WL  G ++T PMT   L  +  LTPNHTLR LIQ W +  A+
Sbjct:  688 DIPSVFMCPILQEVMKNPHVAADGFSYELEAIQEWLSMG-HDTSPMTNLRLDYQM-LTPNHTLRSLIQDWHSKRAA 761          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.343e-11
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  159 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLN 440
            F CP+SL +M DPV V +G TY++  I++W+  G    CP T+Q L +   L PN+T++ LI +WC  N      ++P P    +  +++ LL+
Sbjct:  234 FFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGL-KVCPKTRQTL-THTTLIPNYTVKALIANWCETND----VKLPDPNKSTSLNELSPLLS 321          
The following BLAST results are available for this feature:
BLAST of FC925663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PUB6_ARATH4.424e-1241.75U-box domain-containing protein 6 OS=Arabidopsis t... [more]
PUB19_ARATH2.867e-1133.11U-box domain-containing protein 19 OS=Arabidopsis ... [more]
PUB50_ARATH3.745e-1144.74Putative U-box domain-containing protein 50 OS=Ara... [more]
PUB4_ARATH8.343e-1136.17U-box domain-containing protein 4 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI10FM1 TF Citrus clementina cDNA clone KN0AAP11YI10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925663 ID=FC925663; Name=FC925663; organism=Citrus clementina; type=EST; length=606bp
CAATTCACAGCTTCCCCTCAACTAGAACAACTACTTTTGATCCAATATTT
TCAAAAACCTCTCTAGCCTTCAGATTTTTTTCTCATATATTTTGGGTACT
GTAATTAATTTGAAGAAAAAAAAATCAATTAATGGAAGAAATTGATGTTC
CGACATTTTTTCTGTGCCCAATTTCATTGGCGATCATGAAAGATCCGGTG
ACGGTGCCGACGGGGATAACGTACGATCGGGAAAGCATCGAGAAGTGGTT
ATTTGCCGGCAAAAACAACACGTGTCCGATGACAAAGCAAGTATTATCAT
CAGAATGTGAGCTTACGCCGAACCACACTCTCCGGCGGCTAATTCAATCT
TGGTGCACTCTCAATGCTTCTTATGGCATCGAGAGGATCCCAACGCCGAA
GCCACCCATCAACAAAGCTCAAATCACTAAGCTATTGAATGAAGCAGCTA
AGTCTCCTCAGATGCAAATCAAGTGCCTTAAGAAGCTAAGATCAATCGCG
GCCGAGAATGAAACTAACAAGCGTTGTTTAGAATCTGCCGGAGCGGTTGA
GTTCTTGGCTTCATTTGTGACCAACTCCAATGCTATGGAAGAATCGCCCG
AAGGAT
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