FC925664

Overview
NameFC925664
Unique NameFC925664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_SALTI (Thiamine biosynthesis protein thiC OS=Salmonella typhi GN=thiC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.560e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL++HKENF ++H+ EI +IC+ YDV+LS+GDGLRPGSI DAND AQF+EL T GELT  AW+ DVQV+I
Sbjct:  360 AKWCLSHHKENFLFEHFREICEICSAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGELTNIAWEYDVQVMI 432
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_BART1 (Thiamine biosynthesis protein thiC OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=thiC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.560e-24
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL +HKE+F Y+++DEI DI + YD++LS+GDGLRPGSI DAND AQFAEL T GELT+ AW+K+VQV+I
Sbjct:  330 AKWCLHHHKESFLYENFDEICDIASTYDISLSLGDGLRPGSIADANDEAQFAELKTLGELTKTAWEKNVQVMI 402
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_SALTY (Thiamine biosynthesis protein thiC OS=Salmonella typhimurium GN=thiC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL++HKENF ++H+ EI +IC  YDV+LS+GDGLRPGSI DAND AQF+EL T GELT+ AW+ DVQV+I
Sbjct:  360 AKWCLSHHKENFLFEHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMI 432
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_SALSV (Thiamine biosynthesis protein thiC OS=Salmonella schwarzengrund (strain CVM19633) GN=thiC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL++HKENF ++H+ EI +IC  YDV+LS+GDGLRPGSI DAND AQF+EL T GELT+ AW+ DVQV+I
Sbjct:  360 AKWCLSHHKENFLFEHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMI 432
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_SALPK (Thiamine biosynthesis protein thiC OS=Salmonella paratyphi A (strain AKU_12601) GN=thiC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL++HKENF ++H+ EI +IC  YDV+LS+GDGLRPGSI DAND AQF+EL T GELT+ AW+ DVQV+I
Sbjct:  360 AKWCLSHHKENFLFEHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMI 432
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_SALPB (Thiamine biosynthesis protein thiC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=thiC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL++HKENF ++H+ EI +IC  YDV+LS+GDGLRPGSI DAND AQF+EL T GELT+ AW+ DVQV+I
Sbjct:  360 AKWCLSHHKENFLFEHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMI 432
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_SALPA (Thiamine biosynthesis protein thiC OS=Salmonella paratyphi A GN=thiC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL++HKENF ++H+ EI +IC  YDV+LS+GDGLRPGSI DAND AQF+EL T GELT+ AW+ DVQV+I
Sbjct:  360 AKWCLSHHKENFLFEHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMI 432
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_SALNS (Thiamine biosynthesis protein thiC OS=Salmonella newport (strain SL254) GN=thiC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL++HKENF ++H+ EI +IC  YDV+LS+GDGLRPGSI DAND AQF+EL T GELT+ AW+ DVQV+I
Sbjct:  360 AKWCLSHHKENFLFEHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMI 432
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_SALHS (Thiamine biosynthesis protein thiC OS=Salmonella heidelberg (strain SL476) GN=thiC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL++HKENF ++H+ EI +IC  YDV+LS+GDGLRPGSI DAND AQF+EL T GELT+ AW+ DVQV+I
Sbjct:  360 AKWCLSHHKENFLFEHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMI 432
[Close]
BLAST of FC925664 vs. ExPASy Swiss-Prot
Match: THIC_SALG2 (Thiamine biosynthesis protein thiC OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=thiC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    4 AKWCLAYHKENFAYQHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVII 222
            AKWCL++HKENF ++H+ EI +IC  YDV+LS+GDGLRPGSI DAND AQF+EL T GELT+ AW+ DVQV+I
Sbjct:  360 AKWCLSHHKENFLFEHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMI 432
The following BLAST results are available for this feature:
BLAST of FC925664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
THIC_SALTI1.560e-2468.49Thiamine biosynthesis protein thiC OS=Salmonella t... [more]
THIC_BART11.560e-2468.49Thiamine biosynthesis protein thiC OS=Bartonella t... [more]
THIC_SALTY2.038e-2468.49Thiamine biosynthesis protein thiC OS=Salmonella t... [more]
THIC_SALSV2.038e-2468.49Thiamine biosynthesis protein thiC OS=Salmonella s... [more]
THIC_SALPK2.038e-2468.49Thiamine biosynthesis protein thiC OS=Salmonella p... [more]
THIC_SALPB2.038e-2468.49Thiamine biosynthesis protein thiC OS=Salmonella p... [more]
THIC_SALPA2.038e-2468.49Thiamine biosynthesis protein thiC OS=Salmonella p... [more]
THIC_SALNS2.038e-2468.49Thiamine biosynthesis protein thiC OS=Salmonella n... [more]
THIC_SALHS2.038e-2468.49Thiamine biosynthesis protein thiC OS=Salmonella h... [more]
THIC_SALG22.038e-2468.49Thiamine biosynthesis protein thiC OS=Salmonella g... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YN12FM1 TF Citrus clementina cDNA clone KN0AAP8YN12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925664 ID=FC925664; Name=FC925664; organism=Citrus clementina; type=EST; length=302bp
CATGCAAAGTGGTGTTTAGCGTATCACAAAGAAAACTTTGCTTATCAGCA
CTGGGATGAAATACTTGATATTTGTAATCAGTATGATGTGGCTTTGTCAA
TTGGTGATGGGCTGAGACCTGGGTCCATATATGATGCTAATGACACTGCT
CAGTTTGCAGAGCTTTTAACTCAAGGAGAACTGACCCGTAGAGCATGGGA
CAAGGATGTACAGGTAATCATATAATTAATACTATGCAAGAGCTTCATGC
ATGATGTGTCAAGTGCATGTGAAGTAGGTGATGAATGAAGGACCGGGACA
CA
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