FC925746

Overview
NameFC925746
Unique NameFC925746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.332e-84
Identity = 140/219 (63.93%), Postives = 175/219 (79.91%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657
            R I  QRKGAG +FKSH  HRKG ++   L + ER+GY+KG+V +IIHDPGRGAPLA + FR P+ Y   K   +AAEGM+TGQF++CG KA + +GN++PV ++PEG  +CNVE+  GDRGV+ARASG+YA +I+HNPD   TR++LPSGAKK++ S  RAMIG VAGGGRT+KPL KAG +YHK++ K N WP+VRGVAMNPVEHPHGGGNHQHIGH
Sbjct:    3 RRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGH 221          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 6.609e-84
Identity = 141/219 (64.38%), Postives = 172/219 (78.54%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657
            RVI  QRK +G +F++HT  RKG AQ  +L F ER+GY++GVV +IIHDPGRGAPLA+V FR+P+ Y    E F+A EGMYTGQFVYCGK A L VGNVLPV  +PEG ++ NVE   GDRG L R+SG+Y +I+ H+ D   TRVKLPSGAKK++PS  R ++G VAGGGR +KPL KAG A+HK+RVK NCWP+ RGVAMNPV+HPHGGGNHQH+GH
Sbjct:    3 RVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGH 220          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 8.631e-84
Identity = 143/218 (65.60%), Postives = 177/218 (81.19%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            RVI  QRKGAGS+F SHT  R+G A+  +L + ER+GY++GVV +I+HD GRGAPLA+V FR P+ Y  ++E+FIA EG++TGQF+Y GKKA+L VGNVLP+ S+PEG +V NVE   GDRG LARASG+Y +II HNPD + TRV+LPSGAKKII S  R +IG +AGGGRT+KPL KAG A+HK+++K N WPK RGVAMNPV+HPHGGGNHQHIG
Sbjct:    3 RVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIG 220          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 308.145 bits (788), Expect = 2.511e-83
Identity = 141/218 (64.68%), Postives = 176/218 (80.73%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            RVI  QRKGAGS+F SHT  R+G A+  +L + ER+GY++G+V +I+HD GRGAPLA+V FR P+ Y  ++E+FIA EG++TGQF+Y GKKA+L VGNVLP+ S+PEG +V NVE   GDRG LARASG+Y +II HNPD + TRV+LPSGAKK+I S  R +IG +AGGGR +KPL KAG A+HK+R+K N WPK RGVAMNPV+HPHGGGNHQHIG
Sbjct:    3 RVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIG 220          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 8.079e-82
Identity = 137/218 (62.84%), Postives = 173/218 (79.36%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            RVI  QRKGAGS+F SHT  R+G A+  +L + ER+GY++GVV +I+HD GRGAPLA+V FR P+ Y  ++E FIA EG++TGQF+Y GK A+L VGN+LP+ S+PEG +V NVE   GDRG LAR SG+Y ++I HNPD + TR++LPSGAKKI+ S  R +IG +AGGGR +KPL KAG A+HK++VK N WPK RGVAMNPV+HPHGGGNHQHIG
Sbjct:    3 RVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREETFIANEGVHTGQFIYAGKNASLNVGNILPLGSVPEGTIVSNVEERPGDRGALARTSGNYVIVIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIG 220          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.712e-52
Identity = 104/217 (47.93%), Postives = 136/217 (62.67%), Query Frame = 1
Query:    7 IPPQRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            I PQR G G+  F+S +H R GPA++P L        +KG + +++HDPGR  PLA++       ++       A EGMY GQ +  G  A +  GN+LP+  IPEG  + N+E   GD G   R+SG YA+I+        T+V+LPSG    +P+  RA IG +AGGGR EKPL KAGNAYHK++VK   WPKVRGVAMN V HPHGGG+HQH+G
Sbjct:    5 ILPQRMGRGTPTFRSPSHRRVGPAKYPPLKLDRT---IKGKIIDLLHDPGRWVPLAKIVLEDGTTFLTP-----AVEGMYVGQIIEIGPDAHISNGNILPIGKIPEGTQIANIEKRPGDGGKFVRSSGTYALIVGRA--GTKTQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVG 211          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.780e-50
Identity = 103/214 (48.13%), Postives = 134/214 (62.62%), Query Frame = 1
Query:   16 QRKGAGSV-FKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            Q +G G+  ++S TH RKG  ++ S    E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T VKLPSG  K++   CRA +G VAGGGR EKP  KAG  YH    K   WPKVRGVAMN V+HP+GGG HQH+G
Sbjct:    8 QNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLG 214          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.154e-50
Identity = 103/214 (48.13%), Postives = 134/214 (62.62%), Query Frame = 1
Query:   16 QRKGAGSV-FKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            Q +G G+  ++S TH RKG  ++ S    E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T V+LPSG  K++   CRA +G VAGGGR EKP  KAG  YH    K   WPKVRGVAMN V+HP+GGG HQHIG
Sbjct:    8 QNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVIDILHDPGRSAPVAKVKFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIG 214          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.372e-49
Identity = 101/214 (47.20%), Postives = 134/214 (62.62%), Query Frame = 1
Query:   16 QRKGAGSV-FKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            Q +G G+  ++S TH RKG  ++ S    E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP  KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G
Sbjct:    8 QNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLG 214          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.903e-49
Identity = 100/214 (46.73%), Postives = 134/214 (62.62%), Query Frame = 1
Query:   16 QRKGAGSV-FKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            Q +G G+  ++S +H RKG  ++ S    E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP  KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G
Sbjct:    8 QNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLG 214          
The following BLAST results are available for this feature:
BLAST of FC925746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_CAEEL1.332e-8463.9360S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL2_SCHPO6.609e-8464.3860S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL2_CANGA8.631e-8465.6060S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST2.511e-8364.6860S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_ASHGO8.079e-8262.8460S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_STAMF8.712e-5247.9350S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_METM54.780e-5048.1350S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METMP8.154e-5048.1350S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM72.372e-4947.2050S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM66.903e-4946.7350S ribosomal protein L2P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ23FM1 TF Citrus clementina cDNA clone KN0AAP11YJ23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925746 ID=FC925746; Name=FC925746; organism=Citrus clementina; type=EST; length=657bp
CGTGTGATTCCCCCTCAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCA
CACCCACCACCGTAAGGGTCCGGCCCAGTTCCCCAGCCTCCACTTCGGTG
AGCGTAATGGTTACCTCAAGGGTGTCGTCCCAGAGATTATTCACGATCCG
GGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCCCTA
CATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTC
AGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTG
CCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCA
TGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTA
TCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCT
GGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGT
TGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCCCAAAGCTGGTAATGCAT
ACCACAAATTCAGAGTGAAGCCAAACTGCTGGCCTAAGGTGCGTGGTGTG
GCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACAT
TGGTCAT
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