FC925746

Overview
NameFC925746
Unique NameFC925746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.467e-30
Identity = 82/217 (37.79%), Postives = 114/217 (52.53%), Query Frame = 1
Query:    7 IPPQRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            I  QR+G GS V++S +H   G  ++P      R+G  K  + +II  PGR  P+  +          +K   IA  G Y  Q ++ G   +  +G+V  + +IP+G+ V N+E   GD G   RA+G  A++ISH        +KLPSG  K     CRA +G +AG G  + P+ KAG      + K      VRGVAMN V HPHGGGNHQH+G
Sbjct:    5 IVAQRRGHGSLVYRSPSHRHLGDIKYP------RDGTYK--IEDIIQAPGRNTPVLLIRNEK-----NEKNYMIAFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHGA---YVSLKLPSGVNKEFHPRCRATVGFIAGSGARDIPILKAGTHIKYLQSKAKRPYTVRGVAMNAVNHPHGGGNHQHVG 205          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.221e-30
Identity = 82/218 (37.61%), Postives = 110/218 (50.46%), Query Frame = 1
Query:    7 IPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKG--VVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            I PQR+G GS+      HR         H  E     +G  V+ +IIH PGR APL  +          +K   IA  G + GQ +  G   ++  G    + +IP+G+ V N+E   GD G   R++G +A+++SH        +KLPSG  +     CRA +G VA  G  + P+ KAG   H  R K      VRGVAMN V HPHGGGNHQH+G
Sbjct:    5 IIPQRRGHGSLVYRSPSHR---------HITEVKHVDQGTYVIKDIIHAPGRNAPLLELMGSDG-----KKAYQIAFTGAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVG 205          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25
Identity = 68/193 (35.23%), Postives = 101/193 (52.33%), Query Frame = 1
Query:   76 QFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            Q+  + F      +  VV  + +DP R A +A V ++       ++   +AA+G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IP+ CRA +G+V       + L KAG A  +        P VRG AMNPV+HPHGGG  ++ G
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAAKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAARWR-----GVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25
Identity = 74/215 (34.42%), Postives = 108/215 (50.23%), Query Frame = 1
Query:    4 VIPPQRKGAGSVFKSHT--HHRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            ++ P RK AG  F+      HR G  +  +  + F      + G V  I +DP R A +A V +        +K   +A  G+  GQ +  G +A + VGN LP+R+IP G ++ N+E + G    + R++G  A +++   + D   V+LPSG  ++ P  CRA IGQV         + KAG A           P VRGV MNPV+HPHGGG
Sbjct:   33 LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYADG-----EKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQVGNVEHENIVIGKAGRARWL-----GIRPTVRGVVMNPVDHPHGGG 235          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.022e-24
Identity = 75/217 (34.56%), Postives = 110/217 (50.69%), Query Frame = 1
Query:    7 IPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGY-LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            I  +R+G G       H R+    +  + F  R+ + +   V  I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +    R      PKVRGVAMNP++HPHGGG  +  G
Sbjct:   50 ISVRRRGGG-------HKRR----YREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKSRWLGR-----RPKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.022e-24
Identity = 75/217 (34.56%), Postives = 110/217 (50.69%), Query Frame = 1
Query:    7 IPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGY-LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            I  +R+G G       H R+    +  + F  R+ + +   V  I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +    R      PKVRGVAMNP++HPHGGG  +  G
Sbjct:   50 ISVRRRGGG-------HKRR----YREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKSRWLGR-----RPKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.505e-24
Identity = 74/220 (33.64%), Postives = 107/220 (48.64%), Query Frame = 1
Query:    4 VIPPQRKGAGSVFKSHTHHRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG-NHQHIG 654
            VI  +  G  +  K    H+ G  +  +  + F      +   V  I +DP R A +  + +        +K   +A EG+  GQ V  G    ++VGN LP+ +IPEG  V NVE   G  G++AR++G  A I+  + D     ++L SG  + I + CRA IG V  G  +   L KAG + H         P VRG  MNP++HPHGGG + Q IG
Sbjct:   36 VILKKNSGRNNQGKITVRHQGGRVKRYYRIIDFKRNKDDIPATVKSIEYDPNRSANICLLAYADG-----EKRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRHL-----GVRPTVRGSVMNPIDHPHGGGVSKQPIG 245          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.884e-24
Identity = 66/193 (34.20%), Postives = 99/193 (51.30%), Query Frame = 1
Query:   76 QFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            Q+  + F      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A  +        P VRG AMNPV+HPHGGG  ++ G
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARWR-----GVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_SERP5 (50S ribosomal protein L2 OS=Serratia proteamaculans (strain 568) GN=rplB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 64/177 (36.16%), Postives = 95/177 (53.67%), Query Frame = 1
Query:  124 VVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  I++   D     ++L SG  + +P  CRA +G+V       + L KAG A  +        P VRG AMNPV+HPHGGG  ++ G
Sbjct:   77 VVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKVGNALPMRNIPVGSTVHNVEMKPGKGGQIARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVPVDCRATLGEVGNAEHMLRVLGKAGAARWR-----GIRPTVRGTAMNPVDHPHGGGEGKNFG 241          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL2_PROMH (50S ribosomal protein L2 OS=Proteus mirabilis (strain HI4320) GN=rplB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 66/180 (36.67%), Postives = 94/180 (52.22%), Query Frame = 1
Query:  115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            +   V  + +DP R A +A V +        ++   +A +G+  G  V  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IPS CRA IG+V       + L KAG +  +        P VRG AMNPV+HPHGGG  ++ G
Sbjct:   74 IPATVERLEYDPNRSANIALVLYADG-----ERRYILAPKGLKAGDKVQSGVDAAIKTGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTIRLRSGEMRKIPSDCRATIGEVGNSEHMLRVLGKAGASRWR-----GIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
The following BLAST results are available for this feature:
BLAST of FC925746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PICTO2.467e-3037.7950S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_THEAC3.221e-3037.6150S ribosomal protein L2P OS=Thermoplasma acidophi... [more]
RL2_EDWI96.951e-2535.2350S ribosomal protein L2 OS=Edwardsiella ictaluri ... [more]
RL2_DESAP6.951e-2534.4250S ribosomal protein L2 OS=Desulforudis audaxviat... [more]
RL2_BORRA2.022e-2434.5650S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL2.022e-2434.5650S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RL2_MYCAP4.505e-2433.6450S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RL2_PECCP5.884e-2434.2050S ribosomal protein L2 OS=Pectobacterium carotov... [more]
RL2_SERP51.311e-2336.1650S ribosomal protein L2 OS=Serratia proteamaculan... [more]
RL2_PROMH1.311e-2336.6750S ribosomal protein L2 OS=Proteus mirabilis (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ23FM1 TF Citrus clementina cDNA clone KN0AAP11YJ23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925746 ID=FC925746; Name=FC925746; organism=Citrus clementina; type=EST; length=657bp
CGTGTGATTCCCCCTCAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCA
CACCCACCACCGTAAGGGTCCGGCCCAGTTCCCCAGCCTCCACTTCGGTG
AGCGTAATGGTTACCTCAAGGGTGTCGTCCCAGAGATTATTCACGATCCG
GGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCCCTA
CATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTC
AGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTG
CCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCA
TGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTA
TCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCT
GGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGT
TGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCCCAAAGCTGGTAATGCAT
ACCACAAATTCAGAGTGAAGCCAAACTGCTGGCCTAAGGTGCGTGGTGTG
GCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACAT
TGGTCAT
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