FC925747

Overview
NameFC925747
Unique NameFC925747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 57/127 (44.88%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  177 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRH 557
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG  VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL             A AR G +AP +V VP ++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQN 127          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.340e-21
Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  186 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVP 548
            K+  K  Y  KL  LLE+Y  I + + DNV S Q+  IR+ LRG++VVLMGKNTM++R ++     T    +  L+P ++GNVG +FT GDL             APAR G +AP DV +P
Sbjct:    4 KSANKAGYFDKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRALKTFVADT--PEYERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIP 122          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20
Identity = 52/121 (42.98%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  186 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVP 548
            K+  K  Y  KL  LLEEY  I + + DNV S Q+  IR+ LR   VVLMGKNTM++R ++       +  +  L+P ++GNVG +FT GDL             APAR G VAP+DV +P
Sbjct:    4 KSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFL--VDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIP 122          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.833e-19
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  171 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGA-PARVGLVAPIDVVVPP 551
            + K SK +KK  Y  KL  L+++Y++IL+   DNVGS+Q+ ++R+ LRG + +LMGKNT ++  ++ + +         L+PL++ N+G +F K DL             + PAR+G++APIDV +PP
Sbjct:    1 MAKLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKKNLQAVPQIE--KLLPLVKLNMGFVFCKDDLSEIRNIILDNKSSSHPARLGVIAPIDVFIPP 126          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.457e-18
Identity = 52/118 (44.07%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  192 EKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVV 545
            EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR       +  F  L+P ++G VG +FT   L             APAR G VAP D+ V
Sbjct:    6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV 121          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  180 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVP 548
            A   E K  Y  KL  L E+Y  + V   DNV S Q+  +R+ LRG + ++MGKNTM++R +R             L+P+++GNVG +FT  DL             APAR   +AP+DV VP
Sbjct:    2 AISKESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELE--RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVP 122          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  189 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVP 548
            A K+  Y  +L QL+ E+ ++LV +AD+VGS QL  IR  LRG + VLMGKNT ++  +R   ++        L+PL++ NVG IF + D              APA+ G+ AP DV +P
Sbjct:    6 AAKRREYFPRLLQLVLEHPRVLVVSADHVGSKQLAGIRVALRGQATVLMGKNTKIRTALRQQLQQ--QPQLQALLPLVRLNVGFIFCRADPAAVRAVVQQHKVPAPAKQGVTAPTDVFIP 123          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  189 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVP 548
            +++K  +  K  +L   Y +++VA AD VGS QLQ IR+ +RG   VLMGK TM+++ IR  A+       LN    L+ N  +IF K ++            GAPA+ G+ AP DV++P
Sbjct:    6 SKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALN--TYLKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIP 123          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 3
Query:  183 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVP 548
            S +E K  Y+ +    L +Y ++L    DNV S Q+ ++RR LRG   ++MGK T+ K+ +   AE    +A+  L+        LL GN  LIFT  ++             APARVG +AP DV+VP
Sbjct:    3 SVSEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVP 131          
The following BLAST results are available for this feature:
BLAST of FC925747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RLA0L_HUMAN6.731e-2244.8860S acidic ribosomal protein P0-like OS=Homo sapie... [more]
RLA0_NEUCR3.340e-2142.9860S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_PODAN1.658e-2042.9860S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_PLAF81.833e-1937.5060S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_YEAST3.457e-1844.0760S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_SCHPO1.112e-1638.2160S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_EIMTE1.606e-1539.1760S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_DICDI3.955e-1437.5060S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_TRYCR5.165e-1435.6660S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ24FM1 TF Citrus clementina cDNA clone KN0AAP11YJ24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925747 ID=FC925747; Name=FC925747; organism=Citrus clementina; type=EST; length=557bp
GGTTTTTTCCCTTTCACTTCCTTCCCTCCCCTTGTATCTCGTTGAGGTTA
AAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCCCCCCGCTGCTTCGTC
TTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCCCCAACAAAAGT
AGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAAG
ATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAAT
ATTGGTGGCGGCCGCCGACAACGTGGGGTCCCATCAACTCCAGAACATTC
GTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATG
ATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTT
TCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAA
AGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGA
GCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCC
CCGGCAC
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