FC925770

Overview
NameFC925770
Unique NameFC925770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_BACC3 (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain 03BB102) GN=ribH PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.337e-33
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 3 
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 476
            GAL+  K++ V+E +IDV WVPG+FEI ++A+++  SGKY AV+ +G V+RG TTHYD V N  A GV S  + + +P IFGVLT + ++QA+ RAG K+GNKG E+A+ AIEMA L
Sbjct:   32 GALDGLKRHGVEENDIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHL 148

HSP 2 Score: 25.409 bits (54), Expect = 7.337e-33
Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 1 
Query:   34 HLTGFLTKNEGLRFAVVVARFNELVT 111
            HL G      GL+  VVV RFNE +T
Sbjct:    6 HLVG-----TGLKVGVVVGRFNEFIT 26
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_BACAH (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus thuringiensis (strain Al Hakam) GN=ribH PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.337e-33
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 3 
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 476
            GAL+  K++ V+E +IDV WVPG+FEI ++A+++  SGKY AV+ +G V+RG TTHYD V N  A GV S  + + +P IFGVLT + ++QA+ RAG K+GNKG E+A+ AIEMA L
Sbjct:   32 GALDGLKRHGVEENDIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHL 148

HSP 2 Score: 25.409 bits (54), Expect = 7.337e-33
Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 1 
Query:   34 HLTGFLTKNEGLRFAVVVARFNELVT 111
            HL G      GL+  VVV RFNE +T
Sbjct:    6 HLVG-----TGLKVGVVVGRFNEFIT 26
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CHLSY (6,7-dimethyl-8-ribityllumazine synthase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=ribH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.548e-33
Identity = 60/121 (49.59%), Postives = 90/121 (74.38%), Query Frame = 3 
Query:  120 VRGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 482
            + GA +   ++ V  ++ID+ WVPGSFE+ +V  +L +S +Y A++ +GAV+RG TTH++ VA +A+SG+    + +GVPCIFGV+T DN++QA+ RAG K+GNKG EAA  AIEMA+L +
Sbjct:   31 LEGARDGLLRHGVAADHIDIAWVPGSFELPLVCHRLAESSRYDAIIALGAVIRGATTHHEHVAAAASSGIAQVSLQTGVPCIFGVITTDNIEQAIERAGTKAGNKGFEAATAAIEMATLLQ 151

HSP 2 Score: 26.5646 bits (57), Expect = 9.548e-33
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:   64 GLRFAVVVARFNELVT 111
            GLR A+VV+R+N+L+T
Sbjct:   12 GLRIAIVVSRWNDLIT 27
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CHLAA (6,7-dimethyl-8-ribityllumazine synthase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=ribH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.548e-33
Identity = 60/121 (49.59%), Postives = 90/121 (74.38%), Query Frame = 3 
Query:  120 VRGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 482
            + GA +   ++ V  ++ID+ WVPGSFE+ +V  +L +S +Y A++ +GAV+RG TTH++ VA +A+SG+    + +GVPCIFGV+T DN++QA+ RAG K+GNKG EAA  AIEMA+L +
Sbjct:   31 LEGARDGLLRHGVAADHIDIAWVPGSFELPLVCHRLAESSRYDAIIALGAVIRGATTHHEHVAAAASSGIAQVSLQTGVPCIFGVITTDNIEQAIERAGTKAGNKGFEAATAAIEMATLLQ 151

HSP 2 Score: 26.5646 bits (57), Expect = 9.548e-33
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:   64 GLRFAVVVARFNELVT 111
            GLR A+VV+R+N+L+T
Sbjct:   12 GLRIAIVVSRWNDLIT 27
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_BACC1 (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain ATCC 10987) GN=ribH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.556e-33
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 3 
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 476
            GAL+  K++ V+E +IDV WVPG+FEI ++A+++  SGKY AV+ +G V+RG TTHYD V N  A GV S  + + +P IFGVLT + ++QA+ RAG K+GNKG E+A+ AIEMA L
Sbjct:   32 GALDGLKRHGVEEADIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHL 148

HSP 2 Score: 25.409 bits (54), Expect = 9.556e-33
Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 1 
Query:   34 HLTGFLTKNEGLRFAVVVARFNELVT 111
            HL G      GL+  VVV RFNE +T
Sbjct:    6 HLVG-----TGLKVGVVVGRFNEFIT 26
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CLOBM (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=ribH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.556e-33
Identity = 59/119 (49.58%), Postives = 90/119 (75.63%), Query Frame = 3 
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 482
            G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   33 GSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151

HSP 2 Score: 26.5646 bits (57), Expect = 9.556e-33
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 
Query:   61 EGLRFAVVVARFNELVT 111
            EGL+  ++V+RFNE +T
Sbjct:   11 EGLKVGIIVSRFNEFIT 27
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CLOBL (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=ribH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.556e-33
Identity = 59/119 (49.58%), Postives = 90/119 (75.63%), Query Frame = 3 
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 482
            G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   33 GSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151

HSP 2 Score: 26.5646 bits (57), Expect = 9.556e-33
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 
Query:   61 EGLRFAVVVARFNELVT 111
            EGL+  ++V+RFNE +T
Sbjct:   11 EGLKVGIIVSRFNEFIT 27
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CLOBK (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Okra / Type B1) GN=ribH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.556e-33
Identity = 59/119 (49.58%), Postives = 90/119 (75.63%), Query Frame = 3 
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 482
            G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   33 GSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151

HSP 2 Score: 26.5646 bits (57), Expect = 9.556e-33
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 
Query:   61 EGLRFAVVVARFNELVT 111
            EGL+  ++V+RFNE +T
Sbjct:   11 EGLKVGIIVSRFNEFIT 27
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CLOBJ (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=ribH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.556e-33
Identity = 59/119 (49.58%), Postives = 90/119 (75.63%), Query Frame = 3 
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 482
            G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   33 GSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151

HSP 2 Score: 26.5646 bits (57), Expect = 9.556e-33
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 
Query:   61 EGLRFAVVVARFNELVT 111
            EGL+  ++V+RFNE +T
Sbjct:   11 EGLKVGIIVSRFNEFIT 27
[Close]
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CLOBH (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=ribH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.556e-33
Identity = 59/119 (49.58%), Postives = 90/119 (75.63%), Query Frame = 3 
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 482
            G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   33 GSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151

HSP 2 Score: 26.5646 bits (57), Expect = 9.556e-33
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 
Query:   61 EGLRFAVVVARFNELVT 111
            EGL+  ++V+RFNE +T
Sbjct:   11 EGLKVGIIVSRFNEFIT 27
The following BLAST results are available for this feature:
BLAST of FC925770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_BACC37.337e-3353.856,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_BACAH7.337e-3353.856,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_CHLSY9.548e-3349.596,7-dimethyl-8-ribityllumazine synthase OS=Chlorof... [more]
RISB_CHLAA9.548e-3349.596,7-dimethyl-8-ribityllumazine synthase OS=Chlorof... [more]
RISB_BACC19.556e-3353.856,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_CLOBM9.556e-3349.586,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBL9.556e-3349.586,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBK9.556e-3349.586,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBJ9.556e-3349.586,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBH9.556e-3349.586,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YO01FM1 TF Citrus clementina cDNA clone KN0AAP3YO01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925770 ID=FC925770; Name=FC925770; organism=Citrus clementina; type=EST; length=586bp
CATTTATCGTCCTTACAAACGGAAGCTGTGAGGCATTTGACTGGATTCCT
TACAAAAAATGAGGGGCTTCGTTTTGCTGTGGTTGTTGCACGGTTTAATG
AGCTGGTGACAAAACTACTGTTAGAGGAGCTTTGGAGACTTTCAAGAAGT
ATTCAGTTAAGGAAGAAAACATTGATGTTGTGTGGGTTCCTGGTAGTTTT
GAAATTGGTGTTGTTGCACAACAGCTAGGGAAGTCTGGGAAGTATACTGC
AGTTTTATGTATTGGTGCCGTGGTAAGAGGTGATACTACTCACTATGATG
CTGTAGCTAATTCTGCTGCATCCGGAGTTCTTTCTGCTGGCATGAATTCA
GGTGTTCCATGCATATTTGGTGTCCTGACTTGCGATAACATGGACCAGGC
TTTGAATCGAGCTGGTGGTAAATCTGGGAATAAGGGTGCTGAGGCAGCTT
TGACTGCTATTGAAATGGCATCTTTATTTGAGCACCACCTGAAGTAGTGG
TTTCACCAAGAAAAGTTGGACAGAGTCCTTTTTCTGCTCATATTTTCCTT
TCGAGAAAGTGGCTTTTTGTTGTACTTTCATGAAAC
back to top