FC925777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 8.493e-39 Identity = 84/198 (42.42%), Postives = 122/198 (61.62%), Query Frame = 1 Query: 19 SVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDP 612 +V++V+ +E+ I P IRN +AHVDHGK+T +DSL+ AG+++ +VAG D E R +T+K+ ISLY+E G YLIN +D+PGHVDF+ VT +LR+ DG LVVVD +EGV QTETV+RQAL E +RPVL +NK+DR EL++ +E Q ++++ N ++ + P Sbjct: 4 AVRIVEKQLDEILAIAKNPAQIRNAGTLAHVDHGKTTTSDSLLMGAGLLSPKVAGKALAMDYVPIEQLRQMTVKAANISLYFEYG------------GKPYLINFVDTPGHVDFTGHVTRSLRVMDGGLVVVDAVEGVMTQTETVVRQALEEYVRPVLFINKIDRLIKELRLSPQEIQQRILTIVKDFNALIDMFAPP 189
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.109e-38 Identity = 84/198 (42.42%), Postives = 122/198 (61.62%), Query Frame = 1 Query: 19 SVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDP 612 +V++V+ +E+ I P IRN +AHVDHGK+T +DSL+ AG+++ +VAG D E R +T+K+ ISLY+E G YLIN +D+PGHVDF+ VT +LR+ DG LVVVD +EGV QTETV+RQAL E +RPVL +NK+DR EL++ +E Q ++++ N ++ + P Sbjct: 4 AVRVVEKQLDEILAIARNPAQIRNAGTLAHVDHGKTTTSDSLLMGAGLLSPKVAGKALAMDYVPIEQLRQMTVKAANISLYFEYG------------GKPYLINFVDTPGHVDFTGHVTRSLRVMDGGLVVVDAVEGVMTQTETVVRQALEEYVRPVLFINKIDRLIKELRLSPQEIQQRILTIVKDFNALIDMFAPP 189
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: EF2_METKA (Elongation factor 2 OS=Methanopyrus kandleri GN=fusA PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.958e-35 Identity = 85/183 (46.45%), Postives = 112/183 (61.20%), Query Frame = 1 Query: 37 FTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN 585 FT EE HN + H +TL+D L+A AG+I++E+AGD + D + E ERGITI + +S+ +E +G EYLINLID+PGHVDFS +VT A+R DGA+VVV +EGV QTETVLRQAL ER+RPVL +NK+DR EL++ EE F ++I N Sbjct: 539 FTVEE-------HHNFAAEGFVVH----NTTLSDQLLAGAGMISEELAGDQLVLDFDEMEQERGITIDAANVSMVHEY------------EGEEYLINLIDTPGHVDFSGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALRERVRPVLYINKVDRLINELKLSPEEMQNRFLEIISEVN 698
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.318e-28 Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1 Query: 16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G YL N++D+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y PLLG+V Sbjct: 107 QTLPVTVYEMDSLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNV 307
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28 Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1 Query: 16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G YL N++D+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y PLLG+V Sbjct: 107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNV 307
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28 Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1 Query: 16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G YL N++D+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y PLLG+V Sbjct: 106 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNV 306
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28 Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1 Query: 16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G YL N++D+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y PLLG+V Sbjct: 107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNV 307
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28 Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1 Query: 16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G +L N+ID+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y PLLG+V Sbjct: 107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTIVLPDT-----------KGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVLSPLLGNV 307
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: TYPA_HELPY (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori GN=typA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26 Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 1 Query: 79 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 561 NIRN++VIAHVDHGK+TL D L++ +G ++ D R+ D+ E ERGITI S ++YY+ T IN+ID+PGH DF EV L++ DG L++VD EGV QT+ V+++AL I P++ VNK+D+ E +E + F Sbjct: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAIYYKDTK----------------INIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLF 147
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: TYPA_HELPJ (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori J99 GN=typA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26 Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 1 Query: 79 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 561 NIRN++VIAHVDHGK+TL D L++ +G ++ D R+ D+ E ERGITI S ++YY+ T IN+ID+PGH DF EV L++ DG L++VD EGV QT+ V+++AL I P++ VNK+D+ E +E + F Sbjct: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLEKERGITILSKNTAIYYKDTK----------------INIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLF 147 The following BLAST results are available for this feature:
BLAST of FC925777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925777 ID=FC925777; Name=FC925777; organism=Citrus clementina; type=EST; length=654bpback to top |