FC925777

Overview
NameFC925777
Unique NameFC925777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.493e-39
Identity = 84/198 (42.42%), Postives = 122/198 (61.62%), Query Frame = 1
Query:   19 SVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDP 612
            +V++V+   +E+  I   P  IRN   +AHVDHGK+T +DSL+  AG+++ +VAG     D    E  R +T+K+  ISLY+E              G  YLIN +D+PGHVDF+  VT +LR+ DG LVVVD +EGV  QTETV+RQAL E +RPVL +NK+DR   EL++  +E  Q    ++++ N ++  +  P
Sbjct:    4 AVRIVEKQLDEILAIAKNPAQIRNAGTLAHVDHGKTTTSDSLLMGAGLLSPKVAGKALAMDYVPIEQLRQMTVKAANISLYFEYG------------GKPYLINFVDTPGHVDFTGHVTRSLRVMDGGLVVVDAVEGVMTQTETVVRQALEEYVRPVLFINKIDRLIKELRLSPQEIQQRILTIVKDFNALIDMFAPP 189          
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.109e-38
Identity = 84/198 (42.42%), Postives = 122/198 (61.62%), Query Frame = 1
Query:   19 SVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDP 612
            +V++V+   +E+  I   P  IRN   +AHVDHGK+T +DSL+  AG+++ +VAG     D    E  R +T+K+  ISLY+E              G  YLIN +D+PGHVDF+  VT +LR+ DG LVVVD +EGV  QTETV+RQAL E +RPVL +NK+DR   EL++  +E  Q    ++++ N ++  +  P
Sbjct:    4 AVRVVEKQLDEILAIARNPAQIRNAGTLAHVDHGKTTTSDSLLMGAGLLSPKVAGKALAMDYVPIEQLRQMTVKAANISLYFEYG------------GKPYLINFVDTPGHVDFTGHVTRSLRVMDGGLVVVDAVEGVMTQTETVVRQALEEYVRPVLFINKIDRLIKELRLSPQEIQQRILTIVKDFNALIDMFAPP 189          
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: EF2_METKA (Elongation factor 2 OS=Methanopyrus kandleri GN=fusA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.958e-35
Identity = 85/183 (46.45%), Postives = 112/183 (61.20%), Query Frame = 1
Query:   37 FTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN 585
            FT EE        HN      + H     +TL+D L+A AG+I++E+AGD  + D  + E ERGITI +  +S+ +E             +G EYLINLID+PGHVDFS +VT A+R  DGA+VVV  +EGV  QTETVLRQAL ER+RPVL +NK+DR   EL++  EE    F ++I   N
Sbjct:  539 FTVEE-------HHNFAAEGFVVH----NTTLSDQLLAGAGMISEELAGDQLVLDFDEMEQERGITIDAANVSMVHEY------------EGEEYLINLIDTPGHVDFSGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALRERVRPVLYINKVDRLINELKLSPEEMQNRFLEIISEVN 698          
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.318e-28
Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  YL N++D+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y         PLLG+V
Sbjct:  107 QTLPVTVYEMDSLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNV 307          
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28
Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  YL N++D+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y         PLLG+V
Sbjct:  107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNV 307          
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28
Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  YL N++D+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y         PLLG+V
Sbjct:  106 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNV 306          
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28
Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  YL N++D+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y         PLLG+V
Sbjct:  107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNV 307          
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28
Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   16 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE-------DPLLGHV 627
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  +L N+ID+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y         PLLG+V
Sbjct:  107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTIVLPDT-----------KGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVLSPLLGNV 307          
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: TYPA_HELPY (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori GN=typA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   79 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 561
            NIRN++VIAHVDHGK+TL D L++ +G  ++    D R+ D+   E ERGITI S   ++YY+ T                 IN+ID+PGH DF  EV   L++ DG L++VD  EGV  QT+ V+++AL   I P++ VNK+D+   E     +E +  F
Sbjct:    3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAIYYKDTK----------------INIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLF 147          
BLAST of FC925777 vs. ExPASy Swiss-Prot
Match: TYPA_HELPJ (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori J99 GN=typA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   79 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 561
            NIRN++VIAHVDHGK+TL D L++ +G  ++    D R+ D+   E ERGITI S   ++YY+ T                 IN+ID+PGH DF  EV   L++ DG L++VD  EGV  QT+ V+++AL   I P++ VNK+D+   E     +E +  F
Sbjct:    3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLEKERGITILSKNTAIYYKDTK----------------INIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLF 147          
The following BLAST results are available for this feature:
BLAST of FC925777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF2_PYRAE8.493e-3942.42Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]
EF2_THENV1.109e-3842.42Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_METKA1.958e-3546.45Elongation factor 2 OS=Methanopyrus kandleri GN=fu... [more]
U5S1_BOVIN2.318e-2833.02116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB5.165e-2833.02116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE5.165e-2833.02116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN5.165e-2833.02116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK5.165e-2833.02116 kDa U5 small nuclear ribonucleoprotein compone... [more]
TYPA_HELPY1.661e-2640.99GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]
TYPA_HELPJ1.661e-2640.99GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK14FM1 TF Citrus clementina cDNA clone KN0AAP11YK14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925777 ID=FC925777; Name=FC925777; organism=Citrus clementina; type=EST; length=654bp
GTTGGTAATATTTGAGAATCAGTCAAGATGGTGAAGTTCACAGCAGAAGA
GCTCCGGCGTATTATGGACTTCCCACATAACATCCGCAATATGTCTGTTA
TTGCCCATGTTGATCATGGGAAGTCAACCCTTACCGACTCTCTTGTGGCT
GCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGATGTCCGTATGACAGA
TACTCGTCAGGATGAAGCTGAGCGTGGTATTACAATCAAGTCTACTGGTA
TATCTCTCTACTACGAGATGACTGATGCGGCTTTGAAGAGCTTCAAGGGA
GAGCGTCAAGGGAATGAATACCTCATCAACCTTATTGATTCCCCTGGGCA
CGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTCGTATCACTGATGGTG
CACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGTGTCCAAACAGAAACT
GTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCCAGTCTTGACTGTGAA
CAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTGACGGTGAAGAGGCTT
ACCAGACTTTCCAGAAAGTGATTGAGAATGCTAATGTCATTATGGCTACC
TATGAAGATCCCCTCCTTGGCCATGTTCAGGTTTACCCTGAAAAGGGAAC
AGTT
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