FC925780

Overview
NameFC925780
Unique NameFC925780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.573e-43
Identity = 76/128 (59.38%), Postives = 107/128 (83.59%), Query Frame = 1
Query:    4 DDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            D+    FLEL+ K+T+R++VFKI+E +K+V+VEK G PT++Y+DF ASLP  +CRYAVYD+DFVT+ENCQKS+IFF AWSP T+ +R+K++Y++SKD+  REL GI  E+QATDP+E+ L+V ++RAN
Sbjct:   19 DESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.504e-43
Identity = 78/127 (61.42%), Postives = 105/127 (82.68%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 381
            HDDC LKF EL++KR +RFI F ++ K K++IV+K+G+ T +YEDF +SLP  +CR+A+YD+DF+TAE+  KSRIF+I WSPD A+VRSKM+YASS +RFK+EL+GIQ+E+QATD  E+ LD  KDR
Sbjct:   11 HDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.977e-43
Identity = 71/127 (55.91%), Postives = 108/127 (85.04%), Query Frame = 1
Query:    7 DCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            +C   FLEL+ K+++R+++FKI++K K+V+VEK G  T++++DF  SLP  +CRYA+YD+DFVT ENCQKS+IFF+AWSP  +R+R+KM+YA+SK+RF+RELDG+  E+QATDPSE+ +++ ++RA+
Sbjct:   19 ECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 76/128 (59.38%), Postives = 106/128 (82.81%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 384
            +D+C+LKF EL++KR +RFI FK+++K K+++V+++G+   +Y+DF  SLP  +CRYA+YD+DFVTAE+ QKSRIF+I WSP +A+V+SKM+YASS  +FK  L+GIQVELQATD SE+ LD  KDRA
Sbjct:   11 NDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.777e-40
Identity = 70/127 (55.12%), Postives = 103/127 (81.10%), Query Frame = 1
Query:    4 DDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 384
            D+C   F+++K K+ +R+IVFKIEEK ++V V+K+G   ++Y D   SLP ++CRYAV+D+DFVT +NC+KS+IFFIAWSP+ +++R+K++YA+SKD  +R L+GI  ELQATDP+EMG D+ +DRA
Sbjct:   16 DECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRA 142          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.185e-40
Identity = 69/127 (54.33%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    4 DDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 384
            DDC   F+E+K K+ +R++V+K+EEK ++V V+K+G   ++Y+D AASLP ++CRYAV+D+D+VT +NC+ S+IFFI WSP+ +R+R KM+YA+SK   +R LDG+  ELQATDP+EMG D  +DRA
Sbjct:    3 DDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.070e-39
Identity = 66/122 (54.10%), Postives = 102/122 (83.61%), Query Frame = 1
Query:   22 FLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            F ELK ++ +R+++FKI++++++++VEK G P ++Y+DF ASLPA++CRYAVYD DFV+ +NC+KS+IFFI+WSP  +R+R+K IYA S+++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   28 FWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.167e-38
Identity = 68/127 (53.54%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    4 DDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 384
            ++C   F+E+K K+ +RF+V+KI+E+ + V+V+K+G P + YE+  A+LP ++CRYAV+D+DFVT +NCQKS+IFFIAWSP  +R+R+K++YA+SK   +R LDG+  E+QATD SEMG DV + RA
Sbjct:   16 EECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRA 142          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.419e-36
Identity = 80/135 (59.26%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKL------GEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            HDDC L FLELK +RT+R IV+KIE+   QVIVEK       GE  Q+YE+FA SLPA+ECRYA+ D +FV  E     +I FIAWSP TA++R KMIY+S+KDRFKRELDGIQVE  ATD +++ LD  + R N
Sbjct:    4 HDDCKLTFLELKERRTFRSIVYKIEDNM-QVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.022e-34
Identity = 67/139 (48.20%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    4 DDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE-----------NCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            ++C  +F EL+A R +RF+VFKI++  +QV+V+++G     +++  ASLPA+ CRYAVYD+DF  ++              +S+IFF++WSP  A VRSKM+YASS + FK+ELDG+Q++LQATDPSE+ LDV KD  +
Sbjct:   12 EECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
The following BLAST results are available for this feature:
BLAST of FC925780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ADF6_ARATH1.573e-4359.38Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF4_ORYSJ3.504e-4361.42Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF11_ORYSJ5.977e-4355.91Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF3_MAIZE1.472e-4159.38Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF5_ARATH2.777e-4055.12Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF9_ARATH6.185e-4054.33Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF10_ORYSJ3.070e-3954.10Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF5_ORYSJ1.167e-3853.54Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF11_ARATH5.419e-3659.26Putative actin-depolymerizing factor 11 OS=Arabido... [more]
ADF3_ORYSJ1.022e-3448.20Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YO06FM1 TF Citrus clementina cDNA clone KN0AAP3YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925780 ID=FC925780; Name=FC925780; organism=Citrus clementina; type=EST; length=588bp
CATGATGACTGCCTGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTA
CCGCTTCATAGTATTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGG
AAAAACTTGGTGAGCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTT
CCTGCTGAGGAGTGCCGATATGCTGTGTATGATTATGATTTTGTTACCGC
AGAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACA
CTGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTC
AAGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATC
TGAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTC
CTGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGG
TGAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGAT
ATTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCCTCTAGAACCA
TTTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGT
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