FC925790

Overview
NameFC925790
Unique NameFC925790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length360
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.263e-14
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            ++P  +AG  YHK + +   +P+V GVA+NPV+HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  167 DRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPVDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.565e-14
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            E+P   AG  + +FR K   +P VRGVA     HPHGGG HQH+G +STV R+APPG KVG I
Sbjct:  167 ERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRNAPPGAKVGSI 229          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.269e-14
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 191
            +KPL +A  A++K + + + +P+VRGVA+NPVEH HGGGNHQH+G  +TV ++D    QK+GL+
Sbjct:  162 DKPLLKASVAHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQHVGKPTTVSKKDISQEQKIGLV 225          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.493e-14
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            E+P   AG  +  F+ K   +P VRGVA     HPHGGG HQH+G +STV RD PPG KVG I
Sbjct:  168 ERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGAKVGSI 230          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.493e-14
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 185
            EKP  +AGN  HK R   + WP+VRGVA+N ++HP GGG HQH G   T+ R   PG+ VG
Sbjct:  166 EKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPKTIARGTSPGRTVG 226          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.240e-13
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            ++P  +AG  YHK + +   +P+V G+A+N V+HP GGGN +H G  +TV R+APPG+KVG I
Sbjct:  167 DRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHI 229          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.711e-13
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 185
            EKP  +AGN YH+ R K   +PKVRG A++   HPHGGG+HQ  G  + V+++APPGQKVG
Sbjct:  170 EKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHPHGGGSHQQGG--TPVKKNAPPGQKVG 228          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            ++P  +AG  YHK + +   +P+V  VA+NP +HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  167 DRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            ++P  +AG  YHK + +   +P+V  VA+NP +HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  167 DRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            EKPL +AG AY+K++ +   WP  RGV +N V HP GG  H H G  +T  R APPG+KVG I
Sbjct:  169 EKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
The following BLAST results are available for this feature:
BLAST of FC925790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL2_METBF3.263e-1452.3850S ribosomal protein L2P OS=Methanosarcina barker... [more]
RL2_CENSY5.565e-1455.5650S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL8_ENCCU7.269e-1451.5660S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_NITMS9.493e-1453.9750S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_METB69.493e-1452.4650S ribosomal protein L2P OS=Methanoregula boonei ... [more]
RL2_METBU1.240e-1349.2150S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_CALMQ4.711e-1355.7450S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_METMA1.050e-1249.2150S ribosomal protein L2P OS=Methanosarcina mazei ... [more]
RL2_METAC1.050e-1249.2150S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_PYRHO1.790e-1252.3850S ribosomal protein L2P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YO10FM1 TF Citrus clementina cDNA clone KN0AAP3YO10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925790 ID=FC925790; Name=FC925790; organism=Citrus clementina; type=EST; length=360bp
CTGAGAAGCCCCTTTTCAGGGCTGGTAATGCATACCACAAATTCAGAGTG
AAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCTTGAACCCAGTGGA
GCATCCTCATGGAGGAGGTAACCACCAGCACATTGGTCATGCTAGCACTG
TTAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTTATTGCAGCCAGG
AGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCACTGCAGCCAAGGCCGA
CAAGGCTTAAATCCTTTGTGTTACAACAAATCGTCTCTCTATCGCGATCT
GTCATTTTACTTTTCCTGCTGCATCATTACCTTAGAAAAATTTGTTCCCA
TTTGGATCTT
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