FC925793

Overview
NameFC925793
Unique NameFC925793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925793 vs. ExPASy Swiss-Prot
Match: Y1621_SYNY3 (Putative peroxiredoxin sll1621 OS=Synechocystis sp. (strain PCC 6803) GN=sll1621 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 57/142 (40.14%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  123 SVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKIFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALLVDDLKVKAANVE-SGGD------FTVSSADDILKAL 527
            +   +  GKKV+LF +PGAFTPTCS  H+P + +  +E ++  VD+I+C+SVND FVM  W K    +K VK L DG+ ++T  +G+ ++ S  G G RS R+++ V+D K++   +E   GD      F  S AD +L  L
Sbjct:   32 TTEQIFGGKKVVLFSLPGAFTPTCSSNHLPRYEQLFEEFQALGVDDIICLSVNDAFVMFQWGKQIGADK-VKLLPDGNGEFTRKMGMLVEKSNLGFGMRSWRYSMFVNDGKIEKMFIEPEFGDNCPVDPFECSDADTMLAYL 172          
BLAST of FC925793 vs. ExPASy Swiss-Prot
Match: PRX5_HAEIN (Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influenzae GN=HI0572 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 59/152 (38.82%), Postives = 89/152 (58.55%), Query Frame = 3
Query:   81 ILFYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKIFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALLVDDLKVKAANV---ESGGDFTVSSADDILKAL 527
            + F   + D+   V+   L   K VI+F +PGAFTPTCS  H+P + E A   K   VD+IL +SVND FVM AW K   +++++ F+ DG+ ++T  +G+ +   + G G RS R+++LV +  V+   +   E G  F VS AD +LK L
Sbjct:   12 VTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAW-KEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYL 162          
BLAST of FC925793 vs. ExPASy Swiss-Prot
Match: PMP20_EMENI (Putative peroxiredoxin pmp20 OS=Emericella nidulans GN=AN8692 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.943e-20
Identity = 61/174 (35.06%), Postives = 102/174 (58.62%), Query Frame = 3
Query:   42 MAPIAVGDPLPDGILFYF----DEQDQLQQ--VSVHSLA----AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKI-FPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALLVDDLKVKAANVE-SGGDFTVSSADDILKAL 527
            M+ +  GD  P  ++F +    +E+ ++    + ++  A    A KKVILF +PGAFTP CS +HVP +IE+  E+++K VD +  ++ ND FVM AW K    +N  + FL+D  AK++ ++G      E+G   R++R+A+++D  KV  A +E +      SSA+ ++K L
Sbjct:    1 MSGLKAGDSFPADVVFSYIPWTEEKGEITSCGIPINYYASKEWADKKVILFALPGAFTPVCSARHVPEYIERLPEIRAKGVDVVAVLAYNDAFVMSAWGKANGVKNDDILFLSDPEAKFSKSIGW---ADEEG---RTKRYAIVLDHGKVTYAALEPAKNHLEFSSAETVIKHL 168          
BLAST of FC925793 vs. ExPASy Swiss-Prot
Match: YRP2_RHIET (Putative peroxiredoxin in rpoN2 3'region OS=Rhizobium etli PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  141 AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKIFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALLVDDLKVKAANVESG-GD------FTVSSADDILKAL 527
            +GK+VILF +PGAFTP CS   +P F     E K   +D+I C+SVND FVM AW K     K+VK + DGS ++T  +G+ +     G G RS R+A ++++  V+    E G GD      + VSS  +ILK L
Sbjct:   39 SGKRVILFSLPGAFTPICSTFQLPDFESLYVEFKKNGIDDIYCLSVNDAFVMNAWGK-SQGLKNVKLIPDGSGEFTRKMGMLVAKDNLGFGLRSWRYAAVINNGVVEGWFEEEGFGDNCATDPYGVSSPQNILKCL 173          
BLAST of FC925793 vs. ExPASy Swiss-Prot
Match: PMP20_ASPFU (Putative peroxiredoxin pmp20 OS=Aspergillus fumigatus GN=pmp20 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.638e-19
Identity = 59/174 (33.91%), Postives = 96/174 (55.17%), Query Frame = 3
Query:   42 MAPIAVGDPLPDGILF-YFDEQDQLQQVSVHSLA---------AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKIFP-ENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALLVDDLKVKAANVE-SGGDFTVSSADDILKAL 527
            M+ +  GD  P  ++F Y    +   +++   +          A KKVILF +PGAFTP CS +HVP +IEK  E+++K VD +  ++ ND +VM AW K        + FL+D  A+++ ++G      E+G   R++R+AL++D  K+  A +E +      SSA+ +LK L
Sbjct:    1 MSGLKAGDSFPSDVVFSYIPWSEDKGEITACGIPINYNASKEWADKKVILFALPGAFTPVCSARHVPEYIEKLPEIRAKGVDVVAVLAYNDAYVMSAWGKANQVTGDDILFLSDPDARFSKSIGW---ADEEG---RTKRYALVIDHGKITYAALEPAKNHLEFSSAETVLKHL 168          
BLAST of FC925793 vs. ExPASy Swiss-Prot
Match: Y4VD_RHISN (Putative peroxiredoxin y4vD OS=Rhizobium sp. (strain NGR234) GN=NGR_a01200 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 52/136 (38.24%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  141 AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKIFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALLVDDLKVKAANVESG-------GDFTVSSADDILKAL 527
            +GK+V+LF +PGAFTPTCS + +P F    DE     ++ + C+SVND FVM AW K     K V+ + DGS ++T  +G+ +     G G RS R+A +V+D  V+    E G         +  SS  +IL+ L
Sbjct:   39 SGKRVVLFSLPGAFTPTCSTQQLPDFERLYDEFGKVGIEAVYCLSVNDAFVMNAWGKALGLEK-VRLIPDGSGEFTRKMGMLVAKDNLGFGMRSWRYAAVVNDSVVEQWFEEEGFSDNCESDPYWASSPQNILETL 173          
BLAST of FC925793 vs. ExPASy Swiss-Prot
Match: PMP20_LIPKO (Putative peroxisomal peroxiredoxin OS=Lipomyces kononenkoae PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  147 KKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAK-IFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALLVDDLKVKAANVESGGDFTVSSADDILKAL 527
            K V++  +PGAFTPTC+  H+P F+EK   LKS  VD ++ +S NDPFV  A+ K +   +++  F +D  A+++ + GL LDL     GTR+ R+A++V +  VK    +S G    S  D +L AL
Sbjct:   41 KTVVIVAIPGAFTPTCTANHIPPFVEKFTALKSAGVDAVIVLSANDPFVQSAFGKALGVTDEAFIFASDPGAEFSKSAGLSLDL-PPAFGTRTARYAIIVSNGVVKYVEKDSEG-VAGSGVDAVLAAL 166          
BLAST of FC925793 vs. ExPASy Swiss-Prot
Match: AHP1_YEAST (Peroxiredoxin type-2 OS=Saccharomyces cerevisiae GN=AHP1 PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 6.498e-18
Identity = 49/136 (36.03%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  135 LAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADEL-KSKDVDEILCISVNDPFVMKAWAKIF--PENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALLVDD--LKVKAANVESGGDFTVSSADDILKAL 527
            ++  KKVI+ G P AF+PTC++ H+PG+I   DEL K K+VD+++ ++V++PF  +AWAK     +   +KF +D    +T ++G EL + +      S R+A++V++  +   A     G D TVSS + +L  L
Sbjct:   43 ISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVGDGVYW--SGRWAMVVENGIVTYAAKETNPGTDVTVSSVESVLAHL 176          
BLAST of FC925793 vs. ExPASy Swiss-Prot
Match: PMP20_SCHPO (Putative peroxiredoxin pmp20 OS=Schizosaccharomyces pombe GN=pmp20 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 58/162 (35.80%), Postives = 86/162 (53.09%), Query Frame = 3
Query:   51 IAVGDPLPDGILFYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKIFP--ENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALLVDDLKVKAANVESG-GDFTVSSADDILKAL 527
            +AVG  LP   L+    ++ ++        +  K I+ GVPGAFTP CS   VPG+I    +  +K +  I  ++VND FV KAW K F   E   V F+AD + ++T A     D S      RS+R+A +V++ KV    +E+   D  +SSAD +L +L
Sbjct:    2 VAVGSTLPKVTLWENKPEEVVE------FPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQFAAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGPLRSKRYAAVVENGKVVKVFIENEVTDVDISSADKVLSSL 156          
The following BLAST results are available for this feature:
BLAST of FC925793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
Y1621_SYNY33.330e-2240.14Putative peroxiredoxin sll1621 OS=Synechocystis sp... [more]
PRX5_HAEIN4.349e-2238.82Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influen... [more]
PMP20_EMENI6.943e-2035.06Putative peroxiredoxin pmp20 OS=Emericella nidulan... [more]
YRP2_RHIET1.184e-1941.91Putative peroxiredoxin in rpoN2 3'region OS=Rhizob... [more]
PMP20_ASPFU2.638e-1933.91Putative peroxiredoxin pmp20 OS=Aspergillus fumiga... [more]
Y4VD_RHISN4.500e-1938.24Putative peroxiredoxin y4vD OS=Rhizobium sp. (stra... [more]
PMP20_LIPKO2.233e-1839.84Putative peroxisomal peroxiredoxin OS=Lipomyces ko... [more]
AHP1_YEAST6.498e-1836.03Peroxiredoxin type-2 OS=Saccharomyces cerevisiae G... [more]
PMP20_SCHPO9.383e-1735.80Putative peroxiredoxin pmp20 OS=Schizosaccharomyce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YO12FM1 TF Citrus clementina cDNA clone KN0AAP3YO12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925793 ID=FC925793; Name=FC925793; organism=Citrus clementina; type=EST; length=585bp
CGTGTATTTAACCTTTAGGGCGGATCAGATTCTATCTCTAAATGGCTCCT
ATCGCAGTCGGTGACCCCTTGCCGGACGGTATTCTCTTTTACTTCGACGA
ACAAGATCAGTTGCAGCAAGTGTCCGTACACTCGCTCGCTGCCGGTAAAA
AGGTCATCCTCTTTGGCGTCCCCGGTGCTTTCACTCCTACTTGCAGCTTG
AAGCATGTGCCTGGATTCATCGAGAAGGCTGATGAGTTGAAGTCAAAAGA
CGTCGATGAAATTCTCTGCATAAGCGTTAATGACCCATTTGTGATGAAGG
CATGGGCCAAAATATTTCCTGAGAACAAGAGCGTGAAGTTCCTGGCTGAT
GGCTCAGCAAAATACACCCATGCTTTGGGGCTTGAGCTTGACCTCAGTGA
GAAAGGACTTGGCACCCGGTCAAGGAGGTTTGCTCTCTTGGTTGATGACC
TCAAGGTGAAGGCCGCAAATGTTGAATCTGGTGGAGATTTCACAGTCTCC
AGTGCTGATGACATCCTCAAGGCTCTTTAAATTTGCAGTTCCATCCCAGC
TGCTTAGTGTTGGTTGAGTTATTACTTCCTTTTTG
back to top