FC928942

Overview
NameFC928942
Unique NameFC928942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_ASEAQ (Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 4.509e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_ACRAS (Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 4.509e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_DENKL (Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL PE=3 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 5.889e-39
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_ACRFO (Histone H4 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 5.889e-39
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H43_MAIZE (Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 7.692e-39
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGV KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVRKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_STYPL (Histone H4 OS=Styela plicata PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.005e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_PYRSA (Histone H4 OS=Pyrenomonas salina PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.005e-38
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_OIKDI (Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.005e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_STRPU (Histone H4 OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.238e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_PYCHE (Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.238e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of FC928942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_ASEAQ4.509e-3997.56Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2[more]
H4_ACRAS4.509e-3997.56Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=... [more]
H4_DENKL5.889e-3996.34Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL... [more]
H4_ACRFO5.889e-3996.34Histone H4 OS=Acropora formosa PE=3 SV=2[more]
H43_MAIZE7.692e-3998.78Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3[more]
H4_STYPL1.005e-3896.34Histone H4 OS=Styela plicata PE=3 SV=3[more]
H4_PYRSA1.005e-3897.56Histone H4 OS=Pyrenomonas salina PE=3 SV=3[more]
H4_OIKDI1.005e-3896.34Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3[more]
H4_STRPU2.238e-3896.34Histone H4 OS=Strongylocentrotus purpuratus PE=3 S... [more]
H4_PYCHE2.238e-3896.34Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BC09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928942 ID=FC928942; Name=FC928942; organism=Citrus clementina; type=EST; length=626bp
GGCACGAGGCAAAAAAGTAAAATTGTCACGAATCACTCTGATTTATTCAT
CAGACACGCAATATCAGAGAAAAATTATGTCGGGGCGTGGGAAGGGAGGC
AAGGGGTTGGGAAAGGGAGGAGCAAAGCGTCACCGTAAGGTTCTTCGCGA
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTTCATTTTGTAACGTTA
ATTACCCCTATGATTTTGAGTAGAATTAACGATAGATCGTTGTGAAGCTT
CTTGGTATAAAAAAAAAAAAAAAAAA
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