FC929030

Overview
NameFC929030
Unique NameFC929030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929030 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  264 KRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKD 530
            K+ +++ V +      T  + +RGVR+RPWGK+AAEIRD +R  +RVWLGTFD+              +RG +A LNFP   V E++++
Sbjct:   66 KKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVTENVEE 153          
BLAST of FC929030 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 3
Query:  255 VSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVT 611
            V S+      VS+TT    T EK +RGVR+RPWGK+AAEIRD  +  +R+WLGT+++              +RG  A+ NF V     + K          SPV   K+K++  +K VT
Sbjct:  100 VKSESTVSPVVSATT--TTTGEKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEK-----KAPPPSPVKKKKKKNNKSKKSVT 210          
BLAST of FC929030 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  246 EALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 500
            + L++   + +E  SS + E P   K YRGVR+RPWGK+AAEIRD  +   RVWLGTF++               RGS A LNFP
Sbjct:   37 QPLITGSAVTKECESSMSLERP---KKYRGVRQRPWGKWAAEIRDPHK-ATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of FC929030 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 37/81 (45.68%), Postives = 43/81 (53.09%), Query Frame = 3
Query:  258 SSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 500
            SS   K+ E      +   K+  YRGVR+RPWGKFAAEIRD  R   RVWLGTF++               RG  A LNFP
Sbjct:  113 SSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of FC929030 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 3
Query:  237 ATSEALVSSKRIKEEEVSSTTEENPTKEK---SYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVER 509
            +T   LV S   K+   S+   E  +K K    YRG+R+RPWGK+AAEIRD  R G R WLGTFD+              +RG+ A +NFP E+
Sbjct:   95 STGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRD-PRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEK 187          
BLAST of FC929030 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 3
Query:  297 TEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 506
            T     KE  YRGVR+RPWG+FAAEIRD  +   RVWLGTFDS             ++RG  A  NFP++
Sbjct:   17 TAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKS-RVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPID 85          
BLAST of FC929030 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = 3
Query:  219 AEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEEGCS 560
            + +T + ++      KRI  +        +   +K YRGVR+RPWGK+AAEIRD  +   R+WLGTF +              +RG  A+ NF V+   E +++ +   E   S
Sbjct:   81 SSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRR-RIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQEQEPESNMS 193          
The following BLAST results are available for this feature:
BLAST of FC929030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CRF1_ARATH8.767e-1240.45Ethylene-responsive transcription factor CRF1 OS=A... [more]
CRF2_ARATH3.331e-1136.97Ethylene-responsive transcription factor CRF2 OS=A... [more]
RAP26_ARATH4.351e-1144.71Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF109_ARATH4.351e-1145.68Ethylene-responsive transcription factor ERF109 OS... [more]
RAP22_ARATH7.422e-1142.55Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF83_ARATH7.422e-1148.57Ethylene-responsive transcription factor 7 OS=Arab... [more]
CRF4_ARATH9.693e-1131.58Ethylene-responsive transcription factor CRF4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DB12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929030 ID=FC929030; Name=FC929030; organism=Citrus clementina; type=EST; length=653bp
GCAACACAACTAGGGAAAAAACAGAGTGAAAAACAGAGTCTCAGAACCTG
AACACACACTCTCATCAAATCCTAATGGATTCCTTGTTCTTCCACTCTCC
AAATTCAATTTCCTCATCGGAATCCTCTTTCGGGTCACCGGAGTCTTTCC
CTTTTTATAACAATTATCTTCCATTCAATGAAAATGACTCAGAAGAAATG
CTTCTCTATGGACTAATAGCAGAAGCCACACCGGAAGCAACATCAGAAGC
ACTAGTAAGCTCCAAGAGAATTAAAGAAGAAGAGGTGAGTTCAACAACAG
AGGAAAACCCCACCAAGGAAAAGTCATATAGAGGCGTTCGACGGCGGCCG
TGGGGGAAATTTGCAGCAGAAATAAGAGATTCAACTAGGCATGGGATTAG
GGTTTGGCTAGGGACATTCGATAGTGCTGAAGCAGCTGCTTTGGCTTACG
ATCAAGCTGCTTTCTCAATGAGGGGCTCTTCAGCTATACTCAATTTTCCC
GTTGAAAGGGTTCAAGAATCACTTAAAGACATGAAGTGTAACACCGAGGA
GGGATGCTCACCTGTGGTTGCACTAAAGAGGAAACATTCTATGAGAAGAA
AAATGGTGACTAATAATAAGAAGCATAAAGAGAGAGATAATTTGAGGATT
GAA
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