FC929039

Overview
NameFC929039
Unique NameFC929039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929039 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.959e-67
Identity = 124/174 (71.26%), Postives = 144/174 (82.76%), Query Frame = 3
Query:  246 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDS 767
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNS 174          
BLAST of FC929039 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.237e-62
Identity = 116/146 (79.45%), Postives = 127/146 (86.99%), Query Frame = 3
Query:  330 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDS 767
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDS 146          
BLAST of FC929039 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.037e-48
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 3
Query:  387 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDS 767
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 126          
BLAST of FC929039 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.417e-33
Identity = 71/93 (76.34%), Postives = 77/93 (82.80%), Query Frame = 3
Query:  489 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDS 767
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDS
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDS 93          
BLAST of FC929039 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.176e-21
Identity = 67/243 (27.57%), Postives = 119/243 (48.97%), Query Frame = 3
Query:   39 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDS 767
            R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F            P    E PLY+++ +     P++
Sbjct: 2778 RLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNT 3013          
The following BLAST results are available for this feature:
BLAST of FC929039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY1.959e-6771.26Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA3.237e-6279.45Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA2.037e-4875.59Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO2.417e-3376.34Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI6.176e-2127.57Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC09RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929039 ID=FC929039; Name=FC929039; organism=Citrus clementina; type=EST; length=767bp
TAAGGGTTCAACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAG
CGTGCCGACGGCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGC
CCACAGTGTCAACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAA
AGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGAC
AAGTCGATGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAA
GGAAAACCCCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTC
AAGACATTGTGGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACA
AAGGCCATCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCAT
CTTCTGCACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCA
CCAAACTGATCGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAA
CAAGGATGTTTCGCCGGTGGCACTGTTCTTCGCCTCGCTAAAGACTTGGC
TGAGAACAACAAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGG
CGGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGC
CAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCC
TGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGA
CGATCCTCCCTGACTCT
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