FC929176

Overview
NameFC929176
Unique NameFC929176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.398e-94
Identity = 171/264 (64.77%), Postives = 211/264 (79.92%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICE 793
            P I V VVD++ ++I  WNSD+LPIYEPGLD +V   RG+NLFFS+D+ K ++EAD++F+SVNTPTK  G G G A DL Y ES +R IA  +   KIVVEKSTVPVK AE+I  IL     N++ +KFQ+LSNPEFLAEGTA++DL NPDRVLIGG  +PEG +AV  L  +Y +WVP +RI+TTN WS+ELSKL ANAFLAQRISS+N++SA+CEATGA +S+VA AVG D+RIG KFL ASVGFGGSCFQKD+L+LVY+CE
Sbjct:   33 PHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCE 296          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: TUAD_BACSU (UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subtilis GN=tuaD PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.827e-47
Identity = 110/260 (42.31%), Postives = 158/260 (60.77%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGL-DGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICE 793
            +V   DI  S+I +  +  +PIYEPGL D V K    + L F+ D+   +  +DI++++V TP    G      ADLTY ++AA+ I +     K++V KSTVPV T + ++ I+   SKG   F ++SNPEFL EG+AI D  N +R +IG        KA   +++++  +     ++ TNL SAE+ K AANAFLA +IS +N ++ +CE  GA+VS+VA  VG DSRIG KFL A +GFGGSCF KD   L+ I +
Sbjct:   26 KVVCCDIDESKIRSLKNGVIPIYEPGLADLVEKNVLDQRLTFTNDIPSAIRASDIIYIAVGTPMSKTG-----EADLTYVKAAAKTIGEHLNGYKVIVNKSTVPVGTGKLVQSIVQKASKGRYSFDVVSNPEFLREGSAIHDTMNMERAVIGSTS----HKAAAIIEELHQPF--HAPVIKTNLESAEMIKYAANAFLATKISFINDIANICERVGADVSKVADGVGLDSRIGRKFLKAGIGFGGSCFPKDTTALLQIAK 274          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UDG_RHIME (UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti GN=rkpK PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.469e-44
Identity = 107/256 (41.80%), Postives = 158/256 (61.72%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAH-WVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLV 781
            +V  VD    +I+A    Q+PI+EPGLD +V        L F+ D++  V+ +D+VF++V TP++    G G A DL+Y  +AAR IA   +   +VV KSTVPV T + +E+I+   +      ++SNPEFL EG AI+D   PDR++IG  +  +G +A + + +VY   ++ +  ++ T   ++EL K A NAFLA +I+ +N ++ LCE  GANV  VA  +G D RIG KFL+A  G+GGSCF KD L LV
Sbjct:   25 DVVCVDKDEGKISALKKGQIPIFEPGLDHLVASNVASGRLNFTDDLKTAVAASDVVFIAVGTPSRR---GDGHA-DLSYVYAAAREIAANLQGFTVVVTKSTVPVGTGDEVERIIRETNPAADVTVVSNPEFLREGAAIEDFKRPDRIVIGV-DGSDG-RAREVMTEVYRPLYLNQSPLVFTTRRTSELIKYAGNAFLAMKITFINEIADLCEKVGANVQDVARGIGLDGRIGSKFLHAGPGYGGSCFPKDTLALV 274          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: YWQF_BACSU (UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subtilis GN=ywqF PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.382e-44
Identity = 104/257 (40.47%), Postives = 155/257 (60.31%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT-HNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYI 787
            V  +DI   +I+       PI+EPGL+ ++ K      L F T  EK +++ADI+F++V TP K+ G      A+L     AA+ IA   K D +VV KSTVPV T + I  ++T H ++ +   + SNPEFL EG+AI D F+ DR++IG  +    +K    L++++  +  +  I  T++ SAE+ K A+NAFLA +IS +N +S +CE  GA++  VA+ +G D RIG +FL A +G+GGSCF KD   LV I
Sbjct:   26 VTCIDIDAHKIDEMRKGISPIFEPGLEELMRKNTADGRLNFETSYEKGLAQADIIFIAVGTPQKSDG-----HANLEQITDAAKRIAKHVKRDTVVVTKSTVPVGTNDLINGLITEHLAEPVSISVASNPEFLREGSAIYDTFHGDRIVIGTAD----EKTANTLEELFRPF--QIPIYQTDIRSAEMIKYASNAFLATKISFINEISNICEKVGADIEAVAYGMGQDKRIGSQFLKAGIGYGGSCFPKDTNALVQI 271          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: Y1054_METJA (Uncharacterized protein MJ1054 OS=Methanocaldococcus jannaschii GN=MJ1054 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.081e-43
Identity = 99/252 (39.29%), Postives = 157/252 (62.30%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSD-KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKD 766
            +V  +DI  S++ A N  + P+YE GL+G++K+   KNL F+T   K + ++D++F+ V TP    G      ADL +  SA   I + + K D K++V KSTVPV T   ++++L    K     ++SNPEFL EG A+ D FNP+RV++G  E    +K ++ +++VY ++  ++   + TN  +AEL K A+NAFLA +IS +N ++ L +   A++  +++A+G D RIG KFLNA +G+GGSCF  D
Sbjct:   25 DVVGIDIDESKVKALNRGECPLYEEGLEGLLKKHVNKNLTFTTSY-KPIKDSDVIFLCVGTPQDKDG-----NADLRFLFSAVEKIKETIDKEDYKVIVIKSTVPVGTNRRVKELL----KDYNVDVVSNPEFLREGIAVYDFFNPERVILGF-ENLNNKKPIEIMEEVYKYFKDKNIPFVITNWETAELIKYASNAFLATKISFINELAKLSDKVKADIKTISYAMGLDPRIGNKFLNAGIGYGGSCFHPD 265          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UDG_PSEAE (UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=udg PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.942e-42
Identity = 101/264 (38.26%), Postives = 151/264 (57.20%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-DRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICE 793
            +V  V+    R+      ++PIYEPGL+ +++ Q     L F+  + + +++A++VF++V TP    G     +ADL++  + A  +    +   IVV KSTVPV TAE +E+I    L    K  +  + SNPEFL EG+A+ D   PDRV+IG  ET  G+     L+ +YA ++   +R+L      AE SK AANAFLA +IS +N M+ LC  TG ++  V   +G+D RIG  F+ A  G+GGSCF KD+  L+   E
Sbjct:   25 QVRCVERDRERVARLRRGEMPIYEPGLESILRDQLDAARLTFTASLAEGLADAEVVFIAVGTPCGEDG-----SADLSHVLAVAEQLGAQLRQACIVVNKSTVPVGTAERVEEIIRLGLARRRKRFRVAVASNPEFLKEGSAVDDFRRPDRVIIGSAETQAGE----TLRQLYAPFLRNHERVLLMGRREAEFSKYAANAFLATKISFMNEMAGLCALTGVDIEDVRRGMGSDKRIGTHFIYAGCGYGGSCFPKDVRALIRSAE 279          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: YTCA_BACSU (Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacillus subtilis GN=ytcA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.818e-40
Identity = 96/260 (36.92%), Postives = 150/260 (57.69%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN--SKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICE 793
            ++   D  V +I       +P YEPGL   + +C   NL FS++V+  + E  ++F++V TP ++ G     +AD    +S    +++  +S K ++ KSTVP  T E I K L  +  SK + F I+SNPEFL EG A+ D+ +PD+ +IG +E      A+  +K +Y H   +   + T+L  AEL K A N FLA +IS +N M+ +CEA  +++S ++ A+G D RIG  FL A +G+GGSCF KD+  L +  +
Sbjct:   25 DMICTDKDVKKIGQLKKGVIPFYEPGLSDAILRCG--NLSFSSEVKSSMEECPVIFIAVGTPPRSDG-----SADTKALQSVIGDLSEAIRSYKTIITKSTVPPGTNENIAKQLIASGVSKNL-FNIVSNPEFLREGNALYDMLHPDKTVIGVQEEDHVSAAI--VKSIYKHI--DTPFIVTSLAGAELIKYANNFFLAAKISFINEMARICEAYQSDISDISRAIGLDPRIGKHFLQAGIGYGGSCFPKDLQALQFAAQ 272          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UDG_RICFE (UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN=udg PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.293e-40
Identity = 99/259 (38.22%), Postives = 146/259 (56.37%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICE 793
            V  +D    +I+  N   LPIYE  LD  +KQ    N L F+      +  A+ +F++V TP+K  G      ADL Y   A   +++    D ++V KSTVP  +   I   L   SKG  F + SNPEFL EG+A++D   PDR+++G       +++ + L+ +YA  + +  + + T+L ++EL K A+N+FLA +I+ +N M+ LCE  G N+  ++  VG D RIG  FLNA  GFGGSCF KDIL L  + E
Sbjct:   26 VTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALEANRLKFTNIYNNELQNAEAIFITVGTPSKESG-----EADLKYVYDAIDKVSEHINKDCLIVIKSTVPPDSCSNIIAYL--KSKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNKESEEILRKIYAPLIEQGAKFVVTDLVTSELIKYASNSFLATKIAFINEMADLCEKIGGNIEDLSKGVGLDQRIGQNFLNAGPGFGGSCFPKDILALNNLVE 273          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UDG_RICTY (UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN=udg PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.073e-39
Identity = 101/255 (39.61%), Postives = 142/255 (55.69%), Query Frame = 2
Query:   35 DISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICE 793
            D+ +S++N      LPIYE  LD  +KQ      L F+          D VF++V TP+K  G      ADL Y   A   ++     D ++V KSTVP  +   I   L   +KG  F + SNPEFL EG+A++D   PDR+++G       Q++   L+ +YA  + +  + L TNL ++EL K A+N+FLA +I+ +N M+ LCE  GAN+  ++  VG D RIG  FLNA  GFGGSCF KDIL L  + E
Sbjct:   33 DVKISKLN---KKILPIYEAKLDEYLKQALESDRLKFTNIYSNDFRNVDAVFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYL--KAKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNQESEALLRTIYAPLIEQGVKFLVTNLVTSELIKYASNSFLATKIAFINEMADLCEKIGANIKDLSQGVGLDQRIGRNFLNAGPGFGGSCFPKDILALNNLVE 273          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UDG_RICCN (UDP-glucose 6-dehydrogenase OS=Rickettsia conorii GN=udg PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.550e-38
Identity = 101/258 (39.15%), Postives = 144/258 (55.81%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICE 793
            V  +D    +I+  N   LPIYE  LD  +KQ      L F+      +  AD +F++V TP+K  GLG    ADL Y   A   + +    D ++V KSTVP  +   I   L   S+G  F + SNPEFL EG+A++D   PDR++IG       +++   L+ +YA  +   + + T+L ++EL K A+N+FLA +I+ +N M+ LCE  G N+  ++  VG D RIG  FLNA  GFGGSCF KDIL L  + E
Sbjct:   26 VTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALESDRLKFTNIYNNELQNADAIFITVGTPSK--GLGE---ADLKYVYDAIDKVFEHINKDCLIVIKSTVPPGSCSNIIAYL--KSRGFSFNVASNPEFLREGSAVEDFLYPDRIVIG----VNNKESEAILRKIYAP-LQGVKFVVTDLVTSELIKYASNSFLATKIAFINEMADLCEKIGGNIKDLSKGVGLDQRIGQNFLNAGPGFGGSCFPKDILALNNLVE 271          
The following BLAST results are available for this feature:
BLAST of FC929176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
UGDH_CAEEL3.398e-9464.77UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]
TUAD_BACSU1.827e-4742.31UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subti... [more]
UDG_RHIME2.469e-4441.80UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti ... [more]
YWQF_BACSU9.382e-4440.47UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subti... [more]
Y1054_METJA6.081e-4339.29Uncharacterized protein MJ1054 OS=Methanocaldococc... [more]
UDG_PSEAE3.942e-4238.26UDP-glucose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
YTCA_BACSU4.818e-4036.92Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacil... [more]
UDG_RICFE6.293e-4038.22UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN... [more]
UDG_RICTY1.073e-3939.61UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN... [more]
UDG_RICCN1.550e-3839.15UDP-glucose 6-dehydrogenase OS=Rickettsia conorii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CH10RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929176 ID=FC929176; Name=FC929176; organism=Citrus clementina; type=EST; length=798bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAGTCAATA
CCCCAACCAAAACTCAGGGTCTCGGTGCTGGCAAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCAGATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGAAGACCGAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCAGGTGGCATTTGCTGTTGGTACAGAC
TCTAGGATTGGGCCCAAATTCTTGAATGCTAGTGTTGGGTTCGGTGGCTC
CTGCTTCCAGAAAGATATTTTGAATCTGGTTTACATCTGCGAGTGCAA
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