FC929176

Overview
NameFC929176
Unique NameFC929176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UDG_STRP8 (UDP-glucose 6-dehydrogenase OS=Streptococcus pyogenes serotype M18 GN=hasB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 67/261 (25.67%), Postives = 114/261 (43.68%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR------ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLV 781
            EV +VDI  S+++  N+   PI +  ++  +K    K L     ++   +  +   V + TPT           D  + E+  + +  V+    +++ KST+P+    E  +K  T        +I+ +PEFL E  A+ D   P R+++   E    +  VKA  + +A  +          +L      AE  KL AN +LA R++  N +    E+   N   +   +  D RIG  + N S G+GG C  KD   L+
Sbjct:   24 EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS---KQLSIKATLDSKAAYKEAELVIIATPTNYNS--RINYFDTQHVETVIKEVLSVNSHATLII-KSTIPIGFITEMRQKFQTD-------RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPK--VKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQLL 269          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UDG_STRP6 (UDP-glucose 6-dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=hasB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 67/261 (25.67%), Postives = 114/261 (43.68%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR------ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLV 781
            EV +VDI  S+++  N+   PI +  ++  +K    K L     ++   +  +   V + TPT           D  + E+  + +  V+    +++ KST+P+    E  +K  T        +I+ +PEFL E  A+ D   P R+++   E    +  VKA  + +A  +          +L      AE  KL AN +LA R++  N +    E+   N   +   +  D RIG  + N S G+GG C  KD   L+
Sbjct:   24 EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS---KQLSIKATLDSKAAYKEAELVIIATPTNYNS--RINYFDTQHVETVIKEVLSVNSHATLII-KSTIPIGFITEMRQKFQTD-------RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPK--VKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQLL 269          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UDG_STRP1 (UDP-glucose 6-dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=hasB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 67/261 (25.67%), Postives = 114/261 (43.68%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR------ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLV 781
            EV +VDI  S+++  N+   PI +  ++  +K    K L     ++   +  +   V + TPT           D  + E+  + +  V+    +++ KST+P+    E  +K  T        +I+ +PEFL E  A+ D   P R+++   E    +  VKA  + +A  +          +L      AE  KL AN +LA R++  N +    E+   N   +   +  D RIG  + N S G+GG C  KD   L+
Sbjct:   24 EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS---KQLSIKATLDSKAAYKEAELVIIATPTNYNS--RINYFDTQHVETVIKEVLSVNSHATLII-KSTIPIGFITEMRQKFQTD-------RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPK--VKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQLL 269          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: UDG_STRPN (UDP-glucose 6-dehydrogenase OS=Streptococcus pneumoniae GN=cap3A PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.012e-13
Identity = 73/257 (28.40%), Postives = 118/257 (45.91%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG-GRETPEGQKAVKALKDVYAHWVPEDR--ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNL 778
            EV V+D+   ++ + N+ + PI +  ++  + + +  NL  S D   HV + D+ +  + TPT           D +  E+A +   + + +  IV+ KST+P   T E  EK  T        +I+ +PEFL E  A+ D   P R+++G   +  E  K      D+      ++   IL      AE++KL +N +LA R+   N +    E  G N   +   V  D RIG  + N S G+GG C  KD   L
Sbjct:   24 EVKVIDVIKDKVESINNRKSPIKDEAIEKYLVE-KELNLEASLD-PAHVYK-DVEYAIIATPTNYDV--DLNQFDTSSVEAAIKTCMEYNDTCTIVI-KSTIPEGYTKEVREKFNTD-------RIIFSPEFLRESKALYDNLYPSRIVVGTDLDDSELTKRAWQFADLLKGGAIKEEVPILVVAFNEAEVAKLFSNTYLATRVRYFNEIDTYSEVKGLNPKTIIDIVCYDPRIGSYYNNPSFGYGGYCLPKDTKQL 267          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: WECC_META3 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=wecC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 70/250 (28.00%), Postives = 106/250 (42.40%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKD 766
            +V  VDI   R+      +L I E GL  ++       NL   T+ E    EAD+  + V TP        GK  DL    SA   I    K   +++ +ST+P KT E I   ++ N+ G    +   PE +  G  +++L   DR  IGG      +K+ +  K++YA ++ E  +  T+  +AE+ KL  N F    I+  N  + +      NV           R+    LN   G GG C   D
Sbjct:   36 KVIGVDIDEERVKTIRDGKLIINEQGLMTLLTGAITSGNLVVKTEPE----EADVYIICVPTPATADK--NGKKCDLICVLSAVNNIKPYLKDGDLIIIESTIPPKTTEKIYDDISKNT-GKNIYMAYCPERVLPGNILKELVENDRT-IGG----INKKSAQLAKEIYASFI-EGNLYITDSTTAEMVKLMENTFRDVNIALANEFAKVSTELDINVWDAINLANKHPRV--NILNPGPGVGGHCISID 270          
BLAST of FC929176 vs. ExPASy Swiss-Prot
Match: WECC_METJA (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanocaldococcus jannaschii GN=wecC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 70/250 (28.00%), Postives = 107/250 (42.80%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKD 766
            +V  VDI+  R+           E  L  +VK      NL   T  EK    AD+  + V TP         K  DLTY   A   I    ++  +++ +ST+P  T + I K L   SK  K  +   PE +  G+ +++L   DRV IGG +    +K+ +  K++Y  +V   +I  T+  +AE+ KL  N +    I+  N  + + E  G NV +         R+    L    G GG C   D
Sbjct:   35 DVIGVDINEKRVKEIKELSFKTTEKDLMTLVKGAINSGNLKVQTKPEK----ADVFIICVPTPCIE--CDGEKKCDLTYLNKAIESIKPYLENGNLIIIESTIPPGTTDDIYKKL---SKDKKIYVAHCPERVLPGSILKELVENDRV-IGGVD----EKSAEMAKEIYETFV-TGKIYLTDAKTAEMVKLMENTYRDVNIALANEFAKIAEEIGINVWEAIELANKHPRV--NILKPGPGVGGHCISID 267          
The following BLAST results are available for this feature:
BLAST of FC929176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
UDG_STRP84.541e-1425.67UDP-glucose 6-dehydrogenase OS=Streptococcus pyoge... [more]
UDG_STRP64.541e-1425.67UDP-glucose 6-dehydrogenase OS=Streptococcus pyoge... [more]
UDG_STRP14.541e-1425.67UDP-glucose 6-dehydrogenase OS=Streptococcus pyoge... [more]
UDG_STRPN1.012e-1328.40UDP-glucose 6-dehydrogenase OS=Streptococcus pneum... [more]
WECC_META35.551e-1228.00UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_METJA9.469e-1228.00UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CH10RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929176 ID=FC929176; Name=FC929176; organism=Citrus clementina; type=EST; length=798bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAGTCAATA
CCCCAACCAAAACTCAGGGTCTCGGTGCTGGCAAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCAGATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGAAGACCGAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCAGGTGGCATTTGCTGTTGGTACAGAC
TCTAGGATTGGGCCCAAATTCTTGAATGCTAGTGTTGGGTTCGGTGGCTC
CTGCTTCCAGAAAGATATTTTGAATCTGGTTTACATCTGCGAGTGCAA
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