FC929217

Overview
NameFC929217
Unique NameFC929217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 58/175 (33.14%), Postives = 89/175 (50.86%), Query Frame = 1
Query:  265 VYCTAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 780
            V  TAG  +SGGH+NPAVT G+ +   ++ +RA++Y+ AQ L +     L++       T      + L  G     GL  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARS G A+       W + W++W+GP +G ++A F +
Sbjct:   77 VLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVT----PVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATG---VWTNHWVYWIGPLLGGSLAGFVY 239          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.193e-17
Identity = 75/238 (31.51%), Postives = 111/238 (46.64%), Query Frame = 1
Query:   97 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGIL-GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLG---AISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYT--VFSATDPKR----SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 780
            R+ +AEFI+            I  +  T P  +V   AG  +   +A AFG  +F  V   A +SGGH+NPAVTF   +  ++ +  A+ Y  +Q LG   A   + L  A ++   TR       +A   +   G   E + TF+LVYT  V    +P+       R+     L  L +G       LA   +TG  +NPARS G AV+    K   +Q ++W GP +GAA+AA  +
Sbjct:   20 RSYLAEFISTFLFVFTAVGSAISARMLTTP--DVTSSAGPLVATAVAQAFG--LFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTR-------IAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFK---NQAVYWAGPMVGAAVAALVY 243          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.559e-17
Identity = 64/204 (31.37%), Postives = 98/204 (48.04%), Query Frame = 1
Query:  211 GVGILG-------IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGA---AVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFI 789
            G+G+LG       I  AFG  I   +Y    ISG HINPAVT GL+  +K      V Y++AQ LGA  G  +            GG GA     G S    + AE++GTF+L+ T+      +R+ +       A + IG  V  +      I+G+ +NPAR+ G     +I+     W+   ++ +GP +GA +AA  + ++
Sbjct:   45 GIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.659e-17
Identity = 58/191 (30.37%), Postives = 94/191 (49.21%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAA---EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFI 789
            GIA  +G ++ VLVY    ISGGH NPAVT      R+  L++   Y+VAQ LG+I   G ++         + G  ++ +     G  L A   E I TF L++ +       R+     V   A + IG  + +  +   P+TG  +NPARSLG A ++ +   ++  W++ + P +GA   A+ +  +
Sbjct:   72 GIAIVWGLVLTVLVYTVGHISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLL-------FMGNHDQFSGTVPNGTNLQAFVFEFIMTFFLMFVICGVATDNRA-----VGEFAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGE---YEGIWIYLLAPVVGAIAGAWVYNIV 247          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 56/189 (29.63%), Postives = 95/189 (50.26%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA-ISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFI 789
            GI   +G ++ V++Y T  ISG H NPAVT    + R+    +  +Y+ AQ  G+ ++ + L   F  +    +G    +     S+G  L AEII +F+L++ +       R+  +     LA + +G  + +      PI+G  +NPARSLG A++  + K     W++ VGPF+G     F + F+
Sbjct:   77 GICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGTTPTD-----SSGQALVAEIIISFLLMFVISGVATDSRATGE-----LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKG---IWVYIVGPFVGIFAGGFVYNFM 252          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.251e-16
Identity = 64/191 (33.51%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  220 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 780
            + G+A A      VLV     +SGGH+NPAVT  L     ++  R+ +Y+ AQ L +     L++     Y T  GG A   + L  G     GL  EII TF L++ V++   DP+     S VP   PL  G  V    +A    +G  +NPARS G A+       W   W++W+GP IG  +A   +
Sbjct:   58 LAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLR-----YLT--GGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPR-----SSVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATG---VWTHHWIYWLGPLIGGPLAGLVY 233          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.251e-16
Identity = 58/200 (29.00%), Postives = 93/200 (46.50%), Query Frame = 1
Query:  196 VDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAF--QKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGP-----FIGAAIAAF 774
            ++     G+L  A A G  + +++     ISGGH NPAV+  + L   +  +  + Y V+Q  G + G  L K    ++ ++   G     + +       L  EI+ T +LV  V        +  +  +  LAP  IGF+V +  LA   I+G  +NPAR+ G AV+      WD  W++W+GP     F+G  I  F
Sbjct:   59 IENSPNTGLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTLVGGLKTMLLIPYWVSQLFGGMIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGVEIVMTMLLVLAVCMG-----AVNEKTMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVMAG---YWDFHWIYWLGPLLAGLFVGLLIRLF 250          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 58/193 (30.05%), Postives = 95/193 (49.22%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG----LVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFI 789
            GI   +G ++ V+VY    ISG H NPAVT    +  +    +  +Y++AQ +G+I   G    L     ++Y+     G+N        G  LA EII +F+L++ +   ATD      D  +  +A + +G  + +      PI+G  +NPARS+G A++ +    +   W++ VGP IG    AF +  I
Sbjct:   76 GICVTWGLIVMVMVYTVGYISGAHFNPAVTITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSN--------GQSLAIEIIISFLLMFVISGVATD------DRAIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAIVKH---VYTGLWVYVVGPIIGTLAGAFVYNLI 251          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 59/196 (30.10%), Postives = 96/196 (48.98%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG---GANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFILRAG 801
            G+A A+G  +  +VY    +SG H+NPAVT G  +A +    RA  Y +AQ   A +   +++         +GG          G +    L  E + TF L++ + + ATD      D  V  +A + +G  + +  L   P++G  +NPARS+G A++ +K  A    W++ +GPF GAA  A+ +  I   G
Sbjct:   90 GVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLM-------FGGRHAPVPATLPGGAHAQSLVIEFVITFYLMFVIMAVATD------DQAVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTA---LWVYILGPFAGAAAGAWAYSLIRLTG 269          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: AQPM_METTH (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum GN=aqpM PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 62/204 (30.39%), Postives = 98/204 (48.04%), Query Frame = 1
Query:  211 GVGILG-------IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLG-AISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGA---AVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFI 789
            G+G+LG       I  AFG  I   +Y    ISG HINPAVT GL+  +K      V Y++AQ LG A +    ++    +  T  G GA     G      + AE +GTF+L+ T+      +R+ +       A + IG  V  +      ITG+ +NPAR+ G     +++     W+   ++ +GP +GA +AA  + ++
Sbjct:   45 GIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGRDVVPYIIAQLLGAAFASFIFLQCAGITAATIGGLGATAPFPGIGYWQAMLAETVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTIGNITGSSLNPARTFGPYLNDMVFAGTNLWNYFPIYVIGPVVGAVLAALTYQYL 243          
The following BLAST results are available for this feature:
BLAST of FC929217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
TIP42_MAIZE9.137e-1833.14Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP51_MAIZE1.193e-1731.51Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
AQPM_METTM1.559e-1731.37Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
NO26_SOYBN2.659e-1730.37Nodulin-26 OS=Glycine max PE=1 SV=2[more]
NIP42_ARATH1.010e-1629.63Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
TIP41_ORYSJ2.251e-1633.51Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
AQP8_RAT2.251e-1629.00Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]
NIP1_NICAL8.552e-1630.05Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]
NIP14_ORYSJ8.552e-1630.10Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
AQPM_METTH8.552e-1630.39Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DA09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929217 ID=FC929217; Name=FC929217; organism=Citrus clementina; type=EST; length=812bp
GGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCC
GGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAG
CCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTC
TTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGA
CGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCA
TGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACA
ACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
ATTGGTGCAGCAATTGCAGCTTTCTACCACCCATTCATCTTGAGAGCTGG
AGCTGTCAAGGC
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