FC929391

Overview
NameFC929391
Unique NameFC929391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.968e-26
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS--SGRTNKPVVIADCGQL 279
            GTGG S+YGS F DE+F  KH GPG+LSMANAGP TNGS FF+CT  T WLD +HVVFG V+EG+DVVK +E   +S       KP  IA  G+L
Sbjct:  150 GTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.570e-26
Identity = 60/95 (63.16%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK--PVVIADCGQL 279
            GTGG S+YG  F DENF  KHT  GILSMAN G  TNGS FF+   KT+WLD KHVVFG+VVEGMDVV  I K GS SG+  K   + I DCG L
Sbjct:   75 GTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 169          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.357e-26
Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 279
            GTGG S+YG  F DENF  +H GPG LSMANAG  TNGS FF+ TAKT WLDGKHVVFG+++EGMDVV+ IE     +G R  + VVIA+ G +
Sbjct:   94 GTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.726e-26
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YG  F DENFV KH  P +LSMANAGPGTNGS FF+ T  T  LDGKHVVFG+V++G  VV+A+E + + S R  +  VIA CG+L+
Sbjct:   79 GTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 279
            GTGG+S+YG  F DENF  KH GPG +SMANAG  TNGS FF+ T KT WLDGKHVVFG+V+EGMDVV+ +E   + S  +  K V+I D G++
Sbjct:  112 GTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.767e-26
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 279
            GTGG S+YG  F DENF  +H G G LSMANAGP TNGS FF+ T KT WLDGKHVVFG+VVEGM++V+ IE +   S  R  K + IA CG +
Sbjct:  105 GTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.276e-25
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            G GGES+YG  F DENF  KH G G+LSMANAGP TNGS FF+    T WLDG H VFGQ+V+G  V+  +E+ GS SG  +  + I DCG+L
Sbjct:   82 GRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.176e-25
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG+S+YG  FADENF  KH   G+LSMANAG  TNGS FF+ T  T WLDGKHVVFG+V   + M +V+ IE +GSSSGRT+  V IA+ G L
Sbjct:   71 GTGGKSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSSSGRTSAKVTIAESGAL 165          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.842e-25
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YG  F DENF  KH  P +LSMAN+GPGTNGS FF+ T  T  LDGKHVVFG+V+ G  +V+ IE + + + +    V I DCG+LS
Sbjct:   87 GTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.711e-25
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 279
            GTGG S+YG  F DENF  KH G G LSMANAGP TNG+ FF+ T +  WLDGKHVVFG+VVEGM VV+ IE + + S  R  K V IA+CG +
Sbjct:  105 GTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
The following BLAST results are available for this feature:
BLAST of FC929391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
CYPB_VICFA1.968e-2660.00Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
CYPH_ENCCU2.570e-2663.16Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
CYP6_CAEEL3.357e-2661.70Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPID_RHIOR5.726e-2660.64Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIB_MOUSE7.478e-2659.57Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIB_SCHMA9.767e-2660.64Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
CYP6_RHIOR1.276e-2556.99Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPIA_STRCH2.176e-2561.05Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
PPID_ASPFU2.842e-2556.38Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIB_SCHJA3.711e-2560.64Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BE11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929391 ID=FC929391; Name=FC929391; organism=Citrus clementina; type=EST; length=550bp
GGAACCGGAGGCGAATCAGTCTACGGCTCATAATTCGCCGATGAGAACTT
CGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGAC
CCGGAACCAACGGATCTCATTTCTTCGTCTGTACGGCCAAGACCGAGTGG
CTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGT
CGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGC
CCGTCGTGATCGCTGATTGCGGTCAATTGTCTTATATTTGATCATGATAA
TGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATG
TTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAA
TTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGT
TCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAA
GATAGGGCTTGTCTTGTTATATTACATAAAAAAAAACAAAAAAGAAGAGA
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