FC929746

Overview
NameFC929746
Unique NameFC929746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_THEGJ (50S ribosomal protein L32e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ +VHNV ELE +        A IA  V  +KR+ I+ RA +L + V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPRAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIARTVGARKREAIIARAKELGIKVLN 125          
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_THEON (50S ribosomal protein L32e OS=Thermococcus onnurineus (strain NA1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ +VHNV ELE +        A IA  V  +KR+ I+ RA +L V V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKARSPSIGWSSPRLVRGLHPSGYEEVLVHNVKELEAI--DPARQAARIARTVGARKREMILARAKELGVKVLN 125          
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_PYRKO (50S ribosomal protein L32e OS=Pyrococcus kodakaraensis GN=rpl32e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHNV ELE +        A IA  V  +KR+ I+ RA +L V V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPKAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIAGTVGARKREMILARAKELGVKVLN 125          
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = -3
Query:  248 TYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 373
            TYCAEIAHNVSTKKRKEIVERAAQLD+VV  KLAR  SQE+E
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_SULSO (50S ribosomal protein L32e OS=Sulfolobus solfataricus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  278 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 571
            ++  +E WRRP G D++ R K +G   + ++GY   KK R + P+G ++ +VHNVNEL  +          I+ +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKKVRGFHPSGLRQVIVHNVNELVKVQNQKDNVIVTISSSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_SULIY (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  278 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 571
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_SULIN (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  278 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 571
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_SULIM (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  278 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 571
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_SULIL (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  278 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 571
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC929746 vs. ExPASy Swiss-Prot
Match: RL32_SULIK (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  278 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 571
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
The following BLAST results are available for this feature:
BLAST of FC929746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_THEGJ7.225e-1343.3350S ribosomal protein L32e OS=Thermococcus gammato... [more]
RL32_THEON9.436e-1344.4450S ribosomal protein L32e OS=Thermococcus onnurin... [more]
RL32_PYRKO9.436e-1345.5650S ribosomal protein L32e OS=Pyrococcus kodakarae... [more]
RL32_MAIZE2.102e-1285.7160S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]
RL32_SULSO2.745e-1235.7150S ribosomal protein L32e OS=Sulfolobus solfatari... [more]
RL32_SULIY6.116e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIN6.116e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIM6.116e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIL6.116e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIK6.116e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929746 ID=FC929746; Name=FC929746; organism=Citrus clementina; type=EST; length=723bp
TTTTTTTTTTTTTTTTTANTGCAAAATATGCATAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCAGGTGACAAATAGAAAATACATCA
TAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAACCTAGGAAACA
TTTGGCCAAAAGCAAACACTAACACAAAATATAGAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACATCCA
ATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGGTTGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAAGAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAGATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAGCCAATATTGGGCATCAGAACACAT
CCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACTCTGGGGCCTCTTGAACTTCT
TGAGACGCTTCTTCACTATCTTCTTGGGCAGCAAAGGAACAGCCATTTTT
CTGAAACGATGAGCCGCGGCTTCTGCCAACAAAAGACAGTTGAGAACAGC
AAACATTCGGAAAAAAAAAAAAA
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