FC929840

Overview
NameFC929840
Unique NameFC929840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_XANOM (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 58/169 (34.32%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ + P  L  +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALGPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 59/169 (34.91%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  EHTL+ NVE    +  R RIL ++S + L TT+ + K++ P  +AP  L  +    GEV  A AA        LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRILRNMSDLSLETTLFNEKLAMPTALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP3 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae (strain 342) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 59/169 (34.91%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  EHTL+ NVE    +  R RIL ++S + L TT+ + K++ P  +AP  L  +    GEV  A AA        LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRILRNMSDLSLETTLFNEKLAMPTALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_STRMK (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain K279a) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 60/168 (35.71%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            +++  A   LP   + +  GGA  EHTLK NV     I  R RIL ++S + L T +    ++ P+ +AP  L  +    GEV  ARAA S      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    8 DYRAAAERRLPPFLFHYIDGGAYAEHTLKRNVSDLSDIALRQRILRNMSDLSLETELFGETLAMPVALAPVGLTGMYARRGEVQAARAADSRGIPFTLSTVSVCPIEEVAPAIQRPMWFQLYVLRDRGFMRNALERAQAAGVTTLVFTVDMPVPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_STRM5 (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain R551-3) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 59/168 (35.12%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            +++  A+  LP   + +  GGA  EHTLK NV     I  R R+L ++S + L T +    ++ P+ +AP  L  +    GEV  ARAA S      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    8 DYRAAAQRRLPPFLFHYIDGGAYAEHTLKRNVSDLSDIALRQRVLRNMSDLSLETELFGETLAMPVALAPVGLTGMYARRGEVQAARAADSRGIPFTLSTVSVCPIEEVAPAIQRPMWFQLYVLRDRGFMRNALERAQAAGVTTLVFTVDMPVPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 56/166 (33.73%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKM 597
            ++++  A+  LP   + +  GGA  EHTL+ NVE    +  R R+L ++S + L T + +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYSEHTLRRNVEDLSEVALRQRVLKNMSDLSLETKLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADARGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGM 172          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALCH (L-lactate dehydrogenase [cytochrome] OS=Salmonella choleraesuis GN=lldD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 60/192 (31.25%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP---PLKNLEGLLSTEVSSDTGSN 666
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +  P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P    L+  + ++  + + D G N
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLPMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMLRYWQAVMHPKWAWDVGLN 198          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 55/166 (33.13%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKM 597
            N+++  A+  LP   + +  GGA  E+TL+ NVE    I  R ++L +V+ + L T +   K++ P+ +AP  L  +    GEV  A+AA +      LS  S   IEEV +      ++QLYV K R      ++RA+  G   L+ TVD P  G R  D  + M
Sbjct:    7 NDYRAAAKSRLPPFLFHYVDGGAYAEYTLRRNVEDLSHIALRQQVLRNVADLSLETELFGQKLTMPVALAPVGLTGMLARRGEVQAAKAAQAKGVPFTLSTVSVCPIEEVQSQCAKPIWFQLYVLKDRGFMRNALERAQAAGINTLIFTVDMPVPGARYRDAHSGM 172          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_HAEDU (L-lactate dehydrogenase [cytochrome] OS=Haemophilus ducreyi GN=lldD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 55/166 (33.13%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKM 597
            N+++E AR  +P   + +  GG+  E TL  NV     +  R R+L D+S+++    +   K++ PI++AP     +    GEV  A+AA +      LS  S   IEEV  +     +YQLYV K R    ++++RA+  G   LV TVD P  G R  D+ + M
Sbjct:    7 NDYREAARRRVPPFMFHYADGGSFSERTLARNVSDLADLALRQRVLKDMSQLNTEIELFGEKLAMPIVLAPVGALGMYARRGEVQAAQAAENKGLPFTLSTVSVCPIEEVTPAIKRPMWYQLYVLKDRGFMKSVLERAKAAGCSTLVFTVDMPTPGARYRDLHSGM 172          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALNS (L-lactate dehydrogenase [cytochrome] OS=Salmonella newport (strain SL254) GN=lldD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L T + +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETPLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175          
The following BLAST results are available for this feature:
BLAST of FC929840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_XANOM5.884e-2034.32L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_KLEP75.884e-2034.91L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_KLEP35.884e-2034.91L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_STRMK1.004e-1935.71L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_STRM51.004e-1935.12L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_ENT381.004e-1933.73L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_SALCH1.311e-1931.25L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_AZOC51.311e-1933.13L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_HAEDU1.712e-1933.13L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_SALNS2.236e-1933.14L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionC34001A01EF PostHarvC1 Citrus clementina cDNA clone C34001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929840 ID=FC929840; Name=FC929840; organism=Citrus clementina; type=EST; length=703bp
GAAATCCAATCCTCGGTTTCTCTCTCTTCATTCAGAGATTGTTTTTTTGG
GGTGTATTTAGGAATTAGGTTTCAAATGGCAGCTGAACCTGTTAATTTGA
ATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGAT
TTCTACGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGA
AGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCA
GAATAGATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATT
ATCATTGCTCCAACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGT
AGCCACAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCT
TCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTT
CGCTTCTATCAATTATATGTATTCAAGAAACGAGATATAACAGCTACTCT
AGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGTTG
ATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATT
ACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCGAAGTCAGCTC
TGATACAGGTTCGAATTTTGAAGCTGATGCCCATGAGACCATGGATGCTT
CTT
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