FC929840

Overview
NameFC929840
Unique NameFC929840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_BARHE (L-lactate dehydrogenase [cytochrome] OS=Bartonella henselae GN=lldD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 56/165 (33.94%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKM 597
            ++++ A+  LP   + +  GGA  E T++ N      +  R RIL  V  +DLST + D  +  PII+AP  L  +    GEV  ARAA +      LS  S   I EV  +  +  ++QLYV K R     +++R+  +G + LV TVD P  G R  D  + M
Sbjct:    8 DYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRGVGEVDLSTKLFDQTLDLPIILAPVGLTGMYARRGEVQAARAAVAKGIPFTLSSVSVCPIAEVQKAVGSAFWFQLYVLKDRGFMRDVLERSWASGVRTLVFTVDMPVPGARYRDAHSGM 172          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++ A+  LP   + +  GGA  E T++ N      +  R RIL  V  +DLS  + D +++ PI++AP  L  +    GEV  ARAA +      LS  S  ++ EV A   +  ++QLYV K R     +++R+   G + LV TVD P  G R  D  + M  P
Sbjct:    8 DYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRQVGEVDLSIKLFDQRLNLPIVLAPVGLTGMYARRGEVKAARAAVAKGIPFTLSSVSVCSLAEVHAEVGSGFWFQLYVLKDRGFMRDVLERSWLAGVRTLVFTVDMPVPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ACTPJ (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREAD 582
            N+++E AR  +P   + +  GG+  E TL+ NV     +  R R+L D+S++D    +   K++ P ++AP     +    GEV  A+AA +      LS  S   IEEV A+     ++QLYV K R     +++RA+  G   LV TVD P  G R  D
Sbjct:    7 NDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP7 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREAD 582
            N+++E AR  +P   + +  GG+  E TL+ NV     +  R R+L D+S++D    +   K++ P ++AP     +    GEV  A+AA +      LS  S   IEEV A+     ++QLYV K R     +++RA+  G   LV TVD P  G R  D
Sbjct:    7 NDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP2 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREAD 582
            N+++E AR  +P   + +  GG+  E TL+ NV     +  R R+L D+S++D    +   K++ P ++AP     +    GEV  A+AA +      LS  S   IEEV A+     ++QLYV K R     +++RA+  G   LV TVD P  G R  D
Sbjct:    7 NDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 59/180 (32.78%), Postives = 98/180 (54.44%), Query Frame = 1
Query:   61 GIRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEV-AASSNAVRFYQLY--VFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKN 591
            G++FQ     V+   +++LA   + K    +  G A    T  +N+E+F + +  P  L+     DLSTT+   K   PI +AP  + K+ NPEGE  +  AA   +   ++S  S+++ E++  AS    R+YQLY      +DIT +L+ RA++ G + L++T+DT  LG R +D+ N
Sbjct:   24 GLKFQRPQITVDGRHWEQLAVERMTKDAAGYVYGCAGKRETYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFGQKYPFPIALAPVGVQKIFNPEGESGSCAAATREHIPYIISTASATSFEDIEKASGPGERWYQLYWPSNDHQDITISLLNRAKKTGCRVLIVTLDTFILGWRPSDMDN 203          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++ A+  LP   + +  GGA  E TL+ N      +  R RIL  V  +DLS  + + ++  PI++AP  L  +    GEV  A AA +      LS  S   I EV  +     ++QLYV K R      ++RA  +G + LV TVD P  G R  D  + M  P
Sbjct:    8 DYRKAAKRRLPPFLFHYIDGGAYAEETLRRNCSDLQALALRQRILRQVGGVDLSIKLFEQRLDLPIVLAPVGLTGMYARRGEVQAAHAATAKGIPFTLSSVSVCPIAEVQEAVGGGFWFQLYVLKDRGFMRDALERAWASGVRTLVFTVDMPIPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_YERPY (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lldD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 56/168 (33.33%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            +++  A+  LP   + +  GGA +E TL+ N      I  R R+L ++S + L T +     + P+++ P  L  +    GEV  ARAA        LS  S   IEEVA +     ++QLYV K R      + RA+  G K LV TVD P  G R  D  + M  P
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_YERPS (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis GN=lldD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 56/168 (33.33%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            +++  A+  LP   + +  GGA +E TL+ N      I  R R+L ++S + L T +     + P+++ P  L  +    GEV  ARAA        LS  S   IEEVA +     ++QLYV K R      + RA+  G K LV TVD P  G R  D  + M  P
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_YERPP (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis (strain Pestoides F) GN=lldD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 56/168 (33.33%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            +++  A+  LP   + +  GGA +E TL+ N      I  R R+L ++S + L T +     + P+++ P  L  +    GEV  ARAA        LS  S   IEEVA +     ++QLYV K R      + RA+  G K LV TVD P  G R  D  + M  P
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGP 175          
The following BLAST results are available for this feature:
BLAST of FC929840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_BARHE2.236e-1933.94L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_BARQU4.981e-1932.74L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_ACTPJ8.497e-1933.54L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACTP78.497e-1933.54L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACTP28.497e-1933.54L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
YKN3_SCHPO1.449e-1832.78Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]
LLDD_BART14.217e-1832.74L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_YERPY7.193e-1833.33L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPS7.193e-1833.33L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPP7.193e-1833.33L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]

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Properties
Property NameValue
Genbank descriptionC34001A01EF PostHarvC1 Citrus clementina cDNA clone C34001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929840 ID=FC929840; Name=FC929840; organism=Citrus clementina; type=EST; length=703bp
GAAATCCAATCCTCGGTTTCTCTCTCTTCATTCAGAGATTGTTTTTTTGG
GGTGTATTTAGGAATTAGGTTTCAAATGGCAGCTGAACCTGTTAATTTGA
ATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGAT
TTCTACGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGA
AGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCA
GAATAGATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATT
ATCATTGCTCCAACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGT
AGCCACAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCT
TCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTT
CGCTTCTATCAATTATATGTATTCAAGAAACGAGATATAACAGCTACTCT
AGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGTTG
ATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATT
ACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCGAAGTCAGCTC
TGATACAGGTTCGAATTTTGAAGCTGATGCCCATGAGACCATGGATGCTT
CTT
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