FC929840

Overview
NameFC929840
Unique NameFC929840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:91..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSE (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SE11) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLU (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLI (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12) GN=lldD PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLC (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECOHS (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O9:H4 (strain HS) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECODH (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12 / DH10B) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECOBW (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12 / BW2952) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECO8A (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O8 (strain IAI1) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECO5E (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECO57 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
The following BLAST results are available for this feature:
BLAST of FC929840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ECOSE3.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLU3.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLI3.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLC3.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOHS3.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECODH3.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOBW3.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO8A3.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO5E3.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO573.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionC34001A01EF PostHarvC1 Citrus clementina cDNA clone C34001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929840 ID=FC929840; Name=FC929840; organism=Citrus clementina; type=EST; length=703bp
GAAATCCAATCCTCGGTTTCTCTCTCTTCATTCAGAGATTGTTTTTTTGG
GGTGTATTTAGGAATTAGGTTTCAAATGGCAGCTGAACCTGTTAATTTGA
ATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGAT
TTCTACGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGA
AGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCA
GAATAGATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATT
ATCATTGCTCCAACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGT
AGCCACAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCT
TCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTT
CGCTTCTATCAATTATATGTATTCAAGAAACGAGATATAACAGCTACTCT
AGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGTTG
ATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATT
ACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCGAAGTCAGCTC
TGATACAGGTTCGAATTTTGAAGCTGATGCCCATGAGACCATGGATGCTT
CTT
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