FC929840

Overview
NameFC929840
Unique NameFC929840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:91..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECO55 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain 55989 / EAEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ECO24 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 60/165 (36.36%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKM 597
            +++  A+  LP   + +  GGA  EHTL+ NVE    I  R R+L D+S + L T +    ++ P+ +AP  L  +    GEV  ARAAAS      LS  S   I EVA++     ++QLYV + R     +++RA+  G K LV TVD P  G R  D  + M
Sbjct:    8 DYRHAAKRRLPPFLFHYADGGAYAEHTLRRNVEDLAGIALRQRVLKDMSHLSLETELFGEPLAMPVALAPVGLAGMYARRGEVQAARAAASKGIPFTLSTVSVCPIAEVASAIERPLWFQLYVLRDRGFMKHVLERAKAAGVKTLVFTVDMPVPGARYRDAHSGM 172          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP--PLKNL 621
            ++++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST +    ++ P+ +AP  L  +    GEV  ARAAA+      LS  S   IEEVA + +   ++QLYV K R      ++RA+  G   LV TVD P  G R  D  + M  P  PL+ +
Sbjct:    7 SDYRAAAEARLPPFLFHYMDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNAPLRRM 182          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCM (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lldD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 59/168 (35.12%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            +++  A+  LP   + +  GG+  EHTL+ N +    I  R R+L D+S + L T +   K++ PI ++P  L  +    GEV  A+AA +      LS  S   IEEVA S +   ++QLYV K R     +++RA+  G K LV TVD P  G R  D+ + M  P
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYGEHTLRRNTDDLADIALRQRVLSDMSELSLETELFGEKMALPIALSPVGLTGMYARRGEVQAAQAAEAKGIPFTLSTVSVCPIEEVAPSIHRPIWFQLYVLKDRGFMKNVLERAKAAGVKNLVFTVDMPVPGARYRDMHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCH (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae GN=lldD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 59/168 (35.12%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            +++  A+  LP   + +  GG+  EHTL+ N +    I  R R+L D+S + L T +   K++ PI ++P  L  +    GEV  A+AA +      LS  S   IEEVA S +   ++QLYV K R     +++RA+  G K LV TVD P  G R  D+ + M  P
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYGEHTLRRNTDDLADIALRQRVLSDMSELSLETELFGEKMALPIALSPVGLTGMYARRGEVQAAQAAEAKGIPFTLSTVSVCPIEEVAPSIHRPIWFQLYVLKDRGFMKNVLERAKAAGVKNLVFTVDMPVPGARYRDMHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ENTS8 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=lldD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 58/166 (34.94%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKM 597
            ++++  A+  LP   + +  GGA  E+TLK NVE   ++  R R+L ++S + L TT+ +  +S P+ + P  L  +    GEV  ARAA++      LS  S   IEEVA   N   ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEYTLKRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALGPVGLCGMYARRGEVQAARAASAKGIPFTLSTVSVCPIEEVAPVMNRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGM 172          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ALCFA (L-lactate dehydrogenase [cytochrome] OS=Alcaligenes faecalis GN=lldD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 58/168 (34.52%), Postives = 86/168 (51.19%), Query Frame = 1
Query:  103 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            +++  A+  LP   + +  GGA  EHTL+ NV+    +  R R+L D+S++D S  +   K+S P+ ++P  L  +    GEV  ARAA +      +S  S   IEEVA   +   ++QLYV K R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    8 DYRRAAQKRLPPFLFHYIDGGAYAEHTLRRNVDDLAEVALRQRVLKDMSQLDTSIDLFGEKLSMPVALSPVGLTGMYARRGEVQAARAADARGIPFTMSSVSVCPIEEVAPRLSRPMWFQLYVLKDRGFMRNALERAQAAGCSTLVFTVDMPVPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBY (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AYE) GN=lldD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 60/169 (35.50%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP  L  +    GEV  A AA        LS  S   IEEVA + N   ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGP 175          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBT (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=lldD PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 60/169 (35.50%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP  L  +    GEV  A AA        LS  S   IEEVA + N   ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGP 175          
The following BLAST results are available for this feature:
BLAST of FC929840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ECO553.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO243.120e-2134.91L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_CHRSD3.120e-2136.36L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_XANCB5.322e-2135.23L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_VIBCM5.322e-2135.12L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_VIBCH5.322e-2135.12L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_ENTS85.322e-2134.94L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_ALCFA5.322e-2134.52L-lactate dehydrogenase [cytochrome] OS=Alcaligene... [more]
LLDD_ACIBY6.951e-2135.50L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBT6.951e-2135.50L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001A01EF PostHarvC1 Citrus clementina cDNA clone C34001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929840 ID=FC929840; Name=FC929840; organism=Citrus clementina; type=EST; length=703bp
GAAATCCAATCCTCGGTTTCTCTCTCTTCATTCAGAGATTGTTTTTTTGG
GGTGTATTTAGGAATTAGGTTTCAAATGGCAGCTGAACCTGTTAATTTGA
ATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGAT
TTCTACGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGA
AGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCA
GAATAGATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATT
ATCATTGCTCCAACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGT
AGCCACAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCT
TCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTT
CGCTTCTATCAATTATATGTATTCAAGAAACGAGATATAACAGCTACTCT
AGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGTTG
ATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATT
ACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCGAAGTCAGCTC
TGATACAGGTTCGAATTTTGAAGCTGATGCCCATGAGACCATGGATGCTT
CTT
back to top