FC929840

Overview
NameFC929840
Unique NameFC929840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALPB (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALPA (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALHS (L-lactate dehydrogenase [cytochrome] OS=Salmonella heidelberg (strain SL476) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALG2 (L-lactate dehydrogenase [cytochrome] OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALEP (L-lactate dehydrogenase [cytochrome] OS=Salmonella enteritidis PT4 (strain P125109) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALDC (L-lactate dehydrogenase [cytochrome] OS=Salmonella dublin (strain CT_02021853) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALAR (L-lactate dehydrogenase [cytochrome] OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_SALA4 (L-lactate dehydrogenase [cytochrome] OS=Salmonella agona (strain SL483) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP  L  +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_XANOR (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae GN=lldD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 58/169 (34.32%), Postives = 85/169 (50.30%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ + P  L  +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALGPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGP 175
[Close]
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: LLDD_XANOP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 58/169 (34.32%), Postives = 85/169 (50.30%), Query Frame = 1 
Query:  100 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP 606
            ++++  A+  LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ + P  L  +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV TVD P  G R  D  + M  P
Sbjct:    7 SDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALGPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGP 175
The following BLAST results are available for this feature:
BLAST of FC929840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SALPB4.506e-2033.73L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPA4.506e-2033.73L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALHS4.506e-2033.73L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALG24.506e-2033.73L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALEP4.506e-2033.73L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALDC4.506e-2033.73L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALAR4.506e-2033.73L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALA44.506e-2033.73L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_XANOR5.884e-2034.32L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOP5.884e-2034.32L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]

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Properties
Property NameValue
Genbank descriptionC34001A01EF PostHarvC1 Citrus clementina cDNA clone C34001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929840 ID=FC929840; Name=FC929840; organism=Citrus clementina; type=EST; length=703bp
GAAATCCAATCCTCGGTTTCTCTCTCTTCATTCAGAGATTGTTTTTTTGG
GGTGTATTTAGGAATTAGGTTTCAAATGGCAGCTGAACCTGTTAATTTGA
ATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGAT
TTCTACGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGA
AGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCA
GAATAGATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATT
ATCATTGCTCCAACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGT
AGCCACAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCT
TCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTT
CGCTTCTATCAATTATATGTATTCAAGAAACGAGATATAACAGCTACTCT
AGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGTTG
ATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATT
ACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCGAAGTCAGCTC
TGATACAGGTTCGAATTTTGAAGCTGATGCCCATGAGACCATGGATGCTT
CTT
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