FC929843

Overview
NameFC929843
Unique NameFC929843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929843 vs. ExPASy Swiss-Prot
Match: DPH2_YEAST (Diphthamide biosynthesis protein 2 OS=Saccharomyces cerevisiae GN=DPH2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   97 KFTRVALQ*F*FPDNLLKDSIRIVRALRAELGSLRSSDGERSVDDKDIGLFVMADTTYGSCCVDEVGASHIDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSK 432
            ++  V LQ   FPD+L+KDS  IVR L+++    +            I  +V+ADT Y +CCVDEV A H+ A+ V+H+G  CL+    LP  + FG   ++ +  +EN  +
Sbjct:   61 EYQNVTLQ---FPDDLIKDSSLIVRLLQSKFPHGK------------IKFWVLADTAYSACCVDEVAAEHVHAEVVVHFGDACLNAIQNLPVVYSFGTPFLDLALVVENFQR 157          
BLAST of FC929843 vs. ExPASy Swiss-Prot
Match: DPH2_CAEEL (Diphthamide biosynthesis protein 2 OS=Caenorhabditis elegans GN=dph-2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 EE*NTERLVNSLDMDFELNYEIASTADFIYSRKFTRVALQ*F*FPDNLLKDSIRIVRALRAELGSLRSSDGERSVDDKDIGLFVMADTTYGSCCVDEVGASHIDADCVIHYGHTCLS-PTSTLPAFFVFGKASI 399
            E  NT    N  + D    +EI +T+++I      R+ALQ   FPD+LL  S ++ + + +     RS   +++        FV+ADT+Y SCCVDEV A+H D   ++H+G  C S PT  +   +V G   I
Sbjct:   23 ESSNTGYFENLPENDIHSFFEIDATSEWIKQGNHQRIALQ---FPDSLLPYSEKVTKLIESRF---RSESAKKT--------FVLADTSYRSCCVDEVAAAHADCTALVHFGEACHSAPTDKIDVKYVLGSMPI 142          
BLAST of FC929843 vs. ExPASy Swiss-Prot
Match: DPH2_MOUSE (Diphthamide biosynthesis protein 2 OS=Mus musculus GN=Dph2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 47/152 (30.92%), Postives = 67/152 (44.08%), Query Frame = 1
Query:   43 DFELNYEIASTADFIYSRKFTRVALQ*F*FPDNLLKDSIRIVRALRAELGSLRSSDGERSVDDKDIGLFVMADTTYGSCCVDEVGASHIDADCVIHYGHTCLS-PTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAI 495
            D +  YE+     F+      RV LQ   FPD LL D+  +   L    G+                +F++ DT YGSCCVD +GA    A  ++H+G  CLS P S LP  FV G+  +    C +           P+++L     AHA+
Sbjct:   28 DLDRVYELERVTKFVCDLGCQRVTLQ---FPDQLLGDAGAVAARLEEVTGAK---------------MFILGDTAYGSCCVDVLGAEQAGAQALVHFGPACLSPPASQLPITFVLGQRPVALELCAKAFEAQNPDPTAPVVLLSEPACAHAL 161          
BLAST of FC929843 vs. ExPASy Swiss-Prot
Match: DPH2_RAT (Diphthamide biosynthesis protein 2 OS=Rattus norvegicus GN=Dph2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 45/125 (36.00%), Postives = 58/125 (46.40%), Query Frame = 1
Query:   43 DFELNYEIASTADFIYSRKFTRVALQ*F*FPDNLLKDSIRIVRALRAELGSLRSSDGERSVDDKDIGLFVMADTTYGSCCVDEVGASHIDADCVIHYGHTCLS-PTSTLPAFFVFGKASINTSNC 414
            D +  YE+     FI      RVALQ   FPD LL D+  +   L    GS                +F++ DT YGSCCVD +GA    A  ++H+G  CLS P S LP  FV G+  +    C
Sbjct:   28 DLDRVYELERVTRFICDLGCQRVALQ---FPDQLLGDAGAVAARLEEVTGSK---------------MFILGDTAYGSCCVDVLGAEQAGAQALVHFGPACLSPPASLLPITFVLGRRPVALELC 134          
BLAST of FC929843 vs. ExPASy Swiss-Prot
Match: DPH1_SCHPO (Diphthamide biosynthesis protein 1 OS=Schizosaccharomyces pombe GN=dph1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 47/154 (30.52%), Postives = 75/154 (48.70%), Query Frame = 1
Query:   55 NYEIASTADFIYSRKFTRVALQ*F*FPDNLLKDSIRIVRALRAELGSLRSSDGERSVDDKDIGLFVMADTTYGSCCVDEVGASHIDADCVIHYGHTCLSPTSTLP--AFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIRE 510
            N+EI  T   I  RK  RVALQ    P+ LL              G + S   E+    + I   VM D TYG+CC+D+  A  +D D ++HYGH+CL P    P    +VF    I+  + + +L KH L +   + ++  +++  ++  I++
Sbjct:   74 NFEIHKTIWHIRLRKAKRVALQ---LPEGLLM------------FGCILSDIFEQFCQVETI---VMGDVTYGACCIDDFTARALDCDFLVHYGHSCLIPVDQTPIKVLYVFVDIKIDLQHVVSSL-KHNLPSNSRLALVGTIQFVGSLNSIKD 208          
The following BLAST results are available for this feature:
BLAST of FC929843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DPH2_YEAST1.427e-1335.71Diphthamide biosynthesis protein 2 OS=Saccharomyce... [more]
DPH2_CAEEL7.082e-1334.33Diphthamide biosynthesis protein 2 OS=Caenorhabdit... [more]
DPH2_MOUSE1.578e-1230.92Diphthamide biosynthesis protein 2 OS=Mus musculus... [more]
DPH2_RAT2.691e-1236.00Diphthamide biosynthesis protein 2 OS=Rattus norve... [more]
DPH1_SCHPO5.076e-1130.52Diphthamide biosynthesis protein 1 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionC34001A05EF PostHarvC1 Citrus clementina cDNA clone C34001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929843 ID=FC929843; Name=FC929843; organism=Citrus clementina; type=EST; length=709bp
GAAGAGTGAAATACAGAGAGATTAGTAAACTCTTTGGACATGGACTTCGA
ATTAAATTACGAAATTGCCAGCACTGCCGATTTTATTTACAGTAGGAAAT
TCACTAGAGTTGCTTTGCAGTGATTTTAGTTTCCAGATAATTTATTGAAG
GATTCAATAAGAATAGTGCGAGCGCTGAGGGCCGAACTTGGGTCACTTAG
AAGTTCTGATGGTGAACGGAGTGTGGATGACAAAGATATTGGATTATTTG
TAATGGCAGACACAACTTATGGCAGCTGTTGTGTTGACGAGGTTGGAGCA
TCCCACATTGATGCCGATTGTGTCATACATTATGGACATACCTGTCTTAG
CCCGACATCGACTCTTCCCGCATTCTTTGTATTCGGAAAGGCTTCCATTA
ATACATCAAACTGCATTGAAAACTTATCAAAGCATGCTTTGACCAATGGC
AAACCTATTTTGGTTCTTTATGGATTGGAGTATGCGCATGCAATACCACA
TATTAGAGAAGCAGTGAAAGTAGCATCAAGCTCTTATGGGTCTGGGTCGA
AATTAGAAAGCAATTTTGCTGATGTTATGTGTTCAGTTATAACACCATCC
AAAGATCATAAAAGTTTATGTGGACCAGCTGGTGGCTGCACTGCTGATGA
GAGTTCTTACGCAGTAGCTGGTACTAGGCATACAATTGGAGGCTTGGTCT
GGAATATCC
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