FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB3_CHICK (Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 2.415e-102
Identity = 181/227 (79.74%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GG+YVPRAVL+DLEPGTMDSVRSGPF QIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_TRYCR (Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 3.154e-102
Identity = 175/227 (77.09%), Postives = 197/227 (86.78%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+ +Q GQCGNQIG+KFWEVI DEHG+D TG Y GDSDLQLERINVY++EA+GGRYVPRAVL+DLEPGTMDSVR+GP+GQIFRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDV RKEAE+CDCLQGFQ+CH              ISK+REEYPDR+M+TFS+ PSPKVSDTVVEPYN TLSVHQLVE++DE M +DNEALYDICF+TL  + P F DLNH
Sbjct:    1 MREIVCVQAGQCGNQIGSKFWEVISDEHGVDPTGTYQGDSDLQLERINVYFDEATGGRYVPRAVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCRKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSIIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB4_MOUSE (Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1 SV=3)

HSP 1 Score: 371.318 bits (952), Expect = 3.154e-102
Identity = 180/227 (79.30%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GG YVPRAVL+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEAE+CDCLQGFQ+ H              ISKIREE+PDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB4_MACFA (Tubulin beta-4 chain OS=Macaca fascicularis GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.154e-102
Identity = 180/227 (79.30%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GG YVPRAVL+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEAE+CDCLQGFQ+ H              ISKIREE+PDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB4_HUMAN (Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 3.154e-102
Identity = 180/227 (79.30%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GG YVPRAVL+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEAE+CDCLQGFQ+ H              ISKIREE+PDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB4_BOVIN (Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.154e-102
Identity = 180/227 (79.30%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GG YVPRAVL+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEAE+CDCLQGFQ+ H              ISKIREE+PDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.154e-102
Identity = 180/227 (79.30%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RINVYYNEASGG+YVPRAVL+DLEPGTMDSVRSG FGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGAFGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPSYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB1_CHICK (Tubulin beta-1 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.154e-102
Identity = 179/227 (78.85%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNAT+SVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATVSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3)

HSP 1 Score: 370.933 bits (951), Expect = 4.120e-102
Identity = 176/227 (77.53%), Postives = 196/227 (86.34%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIGAKFWEVI DEHG+D +G+Y GDS+LQ+ERINVY+NEA+GGRYVPRA+L+DLEPGTMDSVR+GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRK +E CDCLQGFQ+CH              I+KIREEYPDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVE ADE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPSGEYRGDSELQIERINVYFNEAAGGRYVPRAILVDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKRSEACDCLQGFQICHSLGGGTGAGMGTLLIAKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVEHADEVFCIDNEALYDICFRTLKLTCPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_TRITR (Tubulin beta chain OS=Trichuris trichiura PE=3 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 5.380e-102
Identity = 177/227 (77.97%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEASGG+YVPRA+L+DLEPGTMDSVR+GPFG +FRPDNF+FGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE+E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRAGPFGTLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNH 227
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB3_CHICK2.415e-10279.74Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1[more]
TBB_TRYCR3.154e-10277.09Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2[more]
TBB4_MOUSE3.154e-10279.30Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1... [more]
TBB4_MACFA3.154e-10279.30Tubulin beta-4 chain OS=Macaca fascicularis GN=TUB... [more]
TBB4_HUMAN3.154e-10279.30Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1... [more]
TBB4_BOVIN3.154e-10279.30Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 S... [more]
TBB1_GADMO3.154e-10279.30Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB1_CHICK3.154e-10278.85Tubulin beta-1 chain OS=Gallus gallus PE=2 SV=1[more]
TBB_GIALA4.120e-10277.53Tubulin beta chain OS=Giardia lamblia PE=2 SV=3[more]
TBB_TRITR5.380e-10277.97Tubulin beta chain OS=Trichuris trichiura PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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