FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 5.380e-102
Identity = 180/227 (79.30%), Postives = 197/227 (86.78%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MRE++HIQGGQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVYYNEA+G  YVPRA+LMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE+ADE M LDNEALYDICF+TL  + P + DLNH
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYNEATG-TYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTNPTYGDLNH 226
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 5.380e-102
Identity = 176/227 (77.53%), Postives = 196/227 (86.34%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIG+KFWEVI DEHGID TG+Y GDSDLQLERIN Y+NEA+ GRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CD LQGFQ+ H              ISK+REEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE+AD+C  LDNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGRYHGDSDLQLERINCYFNEATAGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB2_XENLA (Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE=2 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 7.027e-102
Identity = 178/227 (78.41%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G ++VPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKFVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 9.178e-102
Identity = 179/227 (78.85%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVY+NEA+G +  PRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISKIRE+YPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVE+ADE M +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYFNEATGRKICPRAMLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREKYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKPTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.045e-101
Identity = 179/227 (78.85%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREILH+Q GQCGNQIGAKFWEVI DEHGID +G Y GD++LQLERINVYYNEA+GG+YVPRAVL+DLEPGTMDSVRSG FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREILHLQAGQCGNQIGAKFWEVISDEHGIDPSGTYHGDNELQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB1_ECHMU (Tubulin beta-1 chain OS=Echinococcus multilocularis GN=TUB-1 PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.488e-101
Identity = 173/227 (76.21%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+D TG Y GDSDLQLERINVYY+EASGG+YVPR VL+DLEPGTMDSVR+GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL++SVLDV+RKE E+CDCLQGFQ+CH              ISK+REE+PDR+M TFSV PSPKVSDTVVEPYNATLS+HQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYSEASGGKYVPRCVLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVESVLDVIRKECESCDCLQGFQMCHSLGGGTGSGMGTLLISKMREEFPDRIMNTFSVMPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYDICFRTLKLTNPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_TRYBR (Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.325e-100
Identity = 172/227 (75.77%), Postives = 196/227 (86.34%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+ +Q GQCGNQIG+KFWEVI DEHG+D TG Y GDSDLQLERINVY++EA+GGRYVPR+VL+DLEPGTMDSVR+GP+GQIFRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDV  KEAE+CDCLQGFQ+CH              ISK+RE+YPDR+M+TFS+ PSPKVSDTVVEPYN TLSVHQLVE++DE M +DNEALYDICF+TL  + P F DLNH
Sbjct:    1 MREIVCVQAGQCGNQIGSKFWEVISDEHGVDPTGTYQGDSDLQLERINVYFDEATGGRYVPRSVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCCKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKLREQYPDRIMMTFSIIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.731e-100
Identity = 173/227 (76.21%), Postives = 195/227 (85.90%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+  Q GQCGNQIG+KFWEVI DEHG+D TG Y GDSDLQLERINVY++E++GGRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDV RKEAE+CDCLQGFQ+ H              ISK+REEYPDR+M+TFSV PSP+VSDTVVEPYN TLSVHQLVE++DE M +DNEALYDICF+TL  + P F DLNH
Sbjct:    1 MREIVSCQAGQCGNQIGSKFWEVIADEHGVDPTGSYQGDSDLQLERINVYFDESAGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCRKEAESCDCLQGFQLSHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVIPSPRVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 8.590e-100
Identity = 176/227 (77.53%), Postives = 193/227 (85.02%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIG+KFWEVI DEHGID TG+Y GDSDLQLERINVYYNEA   +YVPRAVL+DLEPGTMDSVRSGPFGQ+FRPDN+VFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEAE+ DCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGQYVGDSDLQLERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESTDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNH 227
[Close]
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB2_DROME (Tubulin beta-2 chain OS=Drosophila melanogaster GN=betaTub85D PE=1 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.122e-99
Identity = 177/227 (77.97%), Postives = 191/227 (84.14%), Query Frame = 2 
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIG KFWEVI DEH ID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSG FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQLERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB_ACHKL5.380e-10279.30Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB6_ECTVR5.380e-10277.53Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]
TBB2_XENLA7.027e-10278.41Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE... [more]
TBB_EUPFO9.178e-10278.85Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB_PSEAM2.045e-10178.85Tubulin beta chain OS=Pseudopleuronectes americanu... [more]
TBB1_ECHMU3.488e-10176.21Tubulin beta-1 chain OS=Echinococcus multiloculari... [more]
TBB_TRYBR1.325e-10075.77Tubulin beta chain OS=Trypanosoma brucei rhodesien... [more]
TBB_LEIME1.731e-10076.21Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBB1_CAEBR8.590e-10077.53Tubulin beta-1 chain OS=Caenorhabditis briggsae GN... [more]
TBB2_DROME1.122e-9977.97Tubulin beta-2 chain OS=Drosophila melanogaster GN... [more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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