FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB5_CHICK (Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.240e-98
Identity = 174/227 (76.65%), Postives = 190/227 (83.70%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIG KFWEVI DEHGID  G Y GDS LQLERINVYYNE+S  +YVPRAVL+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKE E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 2.116e-98
Identity = 169/227 (74.45%), Postives = 187/227 (82.38%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSP-PYFCDLNH 760
            MRE++H+Q GQCGNQIG+KFWE I  EHGID  G Y GDSDLQLERINVYYNE  GG+YVPRA+L+DLEPGTMDSVRSGP G++FRPDNF+FGQSGAGNNWAKGHYTEGAELI+ VLDVVRKE E CDCLQGFQ+CH              I+KIREEYPDR+M +FSV PSPKVSDTVVEPYNATLSVHQLVE  DE   +DNEALYDICF+TL  P P + DLNH
Sbjct:    1 MRELVHMQAGQCGNQIGSKFWETISQEHGIDEMGSYHGDSDLQLERINVYYNEGQGGKYVPRALLIDLEPGTMDSVRSGPLGKLFRPDNFIFGQSGAGNNWAKGHYTEGAELIEEVLDVVRKECEACDCLQGFQLCHSLGGGTGSGMGTLLIAKIREEYPDRIMTSFSVVPSPKVSDTVVEPYNATLSVHQLVESTDETFCIDNEALYDICFRTLKLPNPNYSDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_ONCGI (Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE=3 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.763e-98
Identity = 173/227 (76.21%), Postives = 189/227 (83.26%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIG+KFWEVI DEHGID  G+Y GDSDLQLERINVYYNE    RYVPRA+L+DLEPGTMDSVR+G FGQ+FRPDN+VFGQSGAGNNWAKGHYTEGAEL+DSVLDV+RKEAE CDCLQGFQ  H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPLGQYHGDSDLQLERINVYYNEVQKKRYVPRAILVDLEPGTMDSVRAGAFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAEACDCLQGFQFTHSLGGGTGSGMGTLLISKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB6_BOVIN (Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.609e-98
Identity = 173/227 (76.21%), Postives = 189/227 (83.26%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIG KFWEVI DEHGID  G Y GDS LQLERINVYYNE+S  +YVPRA L+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKE E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB1_BRUPA (Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.609e-98
Identity = 169/227 (74.45%), Postives = 190/227 (83.70%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEVI DEHG+   G Y GDSDLQ+ERINVYYNEA+GG+YVPRAVL+DLEPGTMDS+R G FGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV+RKEAE CDCLQGFQ+ H              ISKIREEYPDR+M +FSV PSPKVSD V+EPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGVQPDGTYKGDSDLQIERINVYYNEANGGKYVPRAVLVDLEPGTMDSIRGGEFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDVVLEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLANPTYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_COPC7 (Tubulin beta chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_04743 PE=3 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 6.156e-98
Identity = 171/227 (75.33%), Postives = 189/227 (83.26%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEV+ DEHGI+  G Y G++DLQLERI+VYYNE    +YVPRAVL+DLEPGTMDSVRSGP G +FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDRMM T+SV PSPKVSDTVVEPYNATLSVHQLVE++DE   +DNEALYDICF+TL  S P + DLNH
Sbjct:    1 MREIVHLQTGQCGNQIGAKFWEVVSDEHGIERDGLYKGNNDLQLERISVYYNEIGASKYVPRAVLVDLEPGTMDSVRSGPLGSLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMCTYSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLSTPTYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_USTMA (Tubulin beta chain OS=Ustilago maydis GN=UM05828 PE=3 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 8.040e-98
Identity = 171/227 (75.33%), Postives = 188/227 (82.82%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQ+G KFWEV+ DEHGIDH G Y G SD QL RINVYYNEASG +YVPRAVL+DLEPGTMDS RSGP G +FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDV+RKEAENCD LQGFQ+ H              ISKIREEYPDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVE++DE   +DNEALY+ICF+TL  + P + DLNH
Sbjct:    1 MREIVHLQTGQCGNQVGTKFWEVLSDEHGIDHNGNYIGTSDDQLARINVYYNEASGNKYVPRAVLVDLEPGTMDSTRSGPLGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAENCDMLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMATFSVLPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYNICFKTLKLNAPTYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_PNECA (Tubulin beta chain OS=Pneumocystis carinii GN=TUB-B PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 8.040e-98
Identity = 170/227 (74.89%), Postives = 189/227 (83.26%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSP-PYFCDLNH 760
            MREI+H+Q GQCGNQIGA FW  I  EHG+D TG Y G SDLQLER+NVY+NEASGG+YVPR++L+DLEPGTMD+VRSGPFG +FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVR+EAE CDCLQGFQ+ H              ISKIREEYPDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVE++DE   +DNEALYDIC +TL  P P + DLNH
Sbjct:    1 MREIVHLQTGQCGNQIGASFWSTISGEHGLDSTGVYQGTSDLQLERMNVYFNEASGGKYVPRSILIDLEPGTMDAVRSGPFGNLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEACDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLPDPGYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB6_MOUSE (Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 8.040e-98
Identity = 172/227 (75.77%), Postives = 189/227 (83.26%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIG KFWEVI DEHGID  G Y GDS LQLERI+VYYNE+S  +YVPRA L+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKE E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVE+ DE   +DNEALYDICF+TL  + P + DLNH
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDQAGGYVGDSALQLERISVYYNESSSKKYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB8_HUMAN (Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1 SV=2)

HSP 1 Score: 355.91 bits (912), Expect = 1.371e-97
Identity = 172/227 (75.77%), Postives = 190/227 (83.70%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSP-PYFCDLNH 760
            MREI+  Q GQCGNQIGAKFWEVI DEH ID  G Y GDS LQLERINVYYNEASGGRYVPRAVL+DLEPGTMDSVRSGPFGQ+FRPDNF+FGQ GAGNNWAKGHYTEGAEL++SV+DVVRKEAE+CDCLQGFQ+ H              +SKIREEYPDR++ TFS+ PSPKVSDTVVEPYNATLSVHQL+E+ADE   +DNEALYDIC +TL  P P + DLNH
Sbjct:    1 MREIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQLERINVYYNEASGGRYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGHYTEGAELMESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNH 227          
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB5_CHICK1.240e-9876.65Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBB3_ECHMU2.116e-9874.45Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBB_ONCGI2.763e-9876.21Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE... [more]
TBB6_BOVIN3.609e-9876.21Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 S... [more]
TBB1_BRUPA3.609e-9874.45Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1[more]
TBB_COPC76.156e-9875.33Tubulin beta chain OS=Coprinopsis cinerea (strain ... [more]
TBB_USTMA8.040e-9875.33Tubulin beta chain OS=Ustilago maydis GN=UM05828 P... [more]
TBB_PNECA8.040e-9874.89Tubulin beta chain OS=Pneumocystis carinii GN=TUB-... [more]
TBB6_MOUSE8.040e-9875.77Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1... [more]
TBB8_HUMAN1.371e-9775.77Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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