FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 4.129e-94
Identity = 169/215 (78.60%), Postives = 182/215 (84.65%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTL 727
            MREI+HIQ GQCGNQIG+KFWEVI DE G+D      GDSDLQLERINVYYNEA+GGRYVP A+LMDLEPGTMDSVR+GP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEG ELIDSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDRMM+TFSV PSPKVSDTVVEPYN TLSVHQLVE+ADE M + NEALYDIC  TL
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEQGVDPPD-IPGDSDLQLERINVYYNEATGGRYVP-AILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGPELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVIPSPKVSDTVVEPYNTTLSVHQLVENADEVMCIGNEALYDICLPTL 213          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB1_HOMAM (Tubulin beta-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 5.393e-94
Identity = 168/231 (72.73%), Postives = 190/231 (82.25%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSG-DSDL---QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIG KFWE+I DEHGI  TG+Y+G D DL   QLERINVYYNE + G+YVPRAVL+DLEPGTMDSVR+GP GQ+F+PD+FVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE CDCLQGFQ+ H              +SKIREE+PDR+M TFSV PSPKVSDTVVEPYNATLS+HQLVE+ DE   +DNEALYDICF+TL    P + DLNH
Sbjct:    1 MREIVHLQTGQCGNQIGTKFWEIISDEHGIQPTGEYTGADKDLMELQLERINVYYNEGNQGKYVPRAVLVDLEPGTMDSVRAGPHGQLFKPDSFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEKCDCLQGFQLTHSLGGGTGSGMGTLLVSKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLQNPTYGDLNH 231          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB8B_HUMAN (Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.201e-93
Identity = 167/227 (73.57%), Postives = 186/227 (81.94%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSP-PYFCDLNH 760
            MREI+  Q GQCGNQIGAKFWEVI DEH ID  G Y GDS LQLERINV+++EASGGRYVPRAVL+DLEPGTMDSV SGPFGQ+FRPDNF+ GQ GAGNNWAKG YTEGAEL +SV+DVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR++ TFS+ PSPKVSDTVVEPYNATLSVHQL+E+ADE   +DNEALYDIC +TL  P P + DLNH
Sbjct:    1 MREIVLTQTGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQLERINVHHHEASGGRYVPRAVLVDLEPGTMDSVHSGPFGQVFRPDNFISGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIENADETFCIDNEALYDICSRTLKLPTPTYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB2_TRIVE (Tubulin beta-2 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.201e-93
Identity = 162/227 (71.37%), Postives = 187/227 (82.38%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+HIQ GQCGNQIGA FW+ I  EHG+D  G Y G S+LQLER+NVY+NEA+  +YVPRAVL+DLEPGTMD+VR+GPFGQ+FRPDNF+FGQS AGNNWAKGHYTEGAEL+D+VLDV+R+EAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVE++DE   +DNEALYDIC +TL  S P + DLN+
Sbjct:    1 MREIVHIQTGQCGNQIGAAFWQTISGEHGLDSNGIYGGSSELQLERMNVYFNEANNNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFIFGQSSAGNNWAKGHYTEGAELVDNVLDVIRREAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPAYGDLNY 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.569e-93
Identity = 162/226 (71.68%), Postives = 185/226 (81.86%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSP-PYFCDLN 757
            MREI+HIQ GQCGNQIGAKFWEVI +EHGID +G Y+G SDLQL+R  VYYNE SGGRYVPRAVL+DLEPG +D++++GP G ++RPDNFV GQSGAGNNWAKGHYTEGAEL+DSVLDVVR+EAE CDCLQGFQV H              +SKIREE+PDRMM T+SV PSPKVSDTVVEPYN TLSVHQLVE+AD    +DNEALY+IC+ TL  P P + DLN
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISEEHGIDSSGAYNGTSDLQLDRAEVYYNEGSGGRYVPRAVLVDLEPGVLDTIKAGPHGGLYRPDNFVAGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEGCDCLQGFQVTHSLGGGTGSGMGTLLVSKIREEFPDRMMCTYSVMPSPKVSDTVVEPYNCTLSVHQLVENADAVFCIDNEALYNICYNTLKKPEPAYPDLN 226          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB_PORYE (Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.496e-93
Identity = 162/226 (71.68%), Postives = 184/226 (81.42%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSP-PYFCDLN 757
            MREI+HIQ GQCGNQIGAKFWEVI +EHGID +G Y G SDLQL+R  VYYNE SGGRYVPRAVL+DLEPG +D++++GP G ++RPDNFV GQSGAGNNWAKGHYTEGAEL+DSVLDVVR+EAE CDCLQGFQV H              +SKIREE+PDRMM T+SV PSPKVSDTVVEPYN TLSVHQLVE+AD    +DNEALY+IC+ TL  P P + DLN
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISEEHGIDSSGAYIGTSDLQLDRAEVYYNEGSGGRYVPRAVLVDLEPGVLDTIKAGPHGGLYRPDNFVAGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEGCDCLQGFQVTHSLGGGTGSGMGTLLVSKIREEFPDRMMCTYSVMPSPKVSDTVVEPYNCTLSVHQLVENADAVFCIDNEALYNICYNTLKKPEPAYPDLN 226          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 5.963e-93
Identity = 160/227 (70.48%), Postives = 187/227 (82.38%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQ+G+ FW+ I  EHG+D +G Y+GDSDLQLER+NVY+NEA G +YVPRAVL+DLEPGTMD++RSGP G ++RPDNF++GQS AGNNWAKGHYTEGAEL+D V+DVVR+EAE+CDCLQGFQV H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVE +DE   LDN+ALYDIC +TL  S P + DLNH
Sbjct:    1 MREIVHLQTGQCGNQVGSAFWQTISGEHGLDASGIYTGDSDLQLERMNVYFNEAGGNKYVPRAVLIDLEPGTMDALRSGPNGALYRPDNFIYGQSSAGNNWAKGHYTEGAELVDQVIDVVRREAESCDCLQGFQVTHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVMPSPKVSDTVVEPYNATLSVHQLVEHSDETFCLDNDALYDICIRTLKLSSPSYGDLNH 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB2_TRIVI (Tubulin beta-2 chain OS=Trichoderma viride GN=tub2 PE=3 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 7.787e-93
Identity = 161/227 (70.93%), Postives = 187/227 (82.38%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI++IQ GQCGNQIGA FW+ I  EHG+D  G Y+G S+LQLER+NVY+NEAS  +YVPRAVL+DLEPGTMD+VR+GPFGQ+FRPDNF+FGQS AGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQ+ H              +SKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVE++DE   +DNEALYDIC +TL  + P + DLN+
Sbjct:    1 MREIVYIQTGQCGNQIGAAFWQTISGEHGLDSNGIYNGSSELQLERMNVYFNEASNNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFIFGQSSAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGSGMGTLLLSKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLNNPAYGDLNY 227          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.017e-92
Identity = 162/229 (70.74%), Postives = 188/229 (82.10%), Query Frame = 2
Query:   83 MREIL--HIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+  H+Q GQCGNQ+G+ FW+ I  EHG+D +G Y G SD QL+R+NVY+NEAS  +YVPRAVL+DLEPGTMD+VRSGPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D VLDVVR+EAENC+CLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLS+HQLVE++D+   +DNEALYDIC +TL  S P + DLNH
Sbjct:    1 MREIVSVHLQTGQCGNQVGSAFWQTISGEHGLDSSGVYGGTSDQQLDRLNVYFNEASNNKYVPRAVLVDLEPGTMDAVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAENCECLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSMHQLVENSDKTFCIDNEALYDICMRTLKLSNPSYGDLNH 229          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2)

HSP 1 Score: 338.961 bits (868), Expect = 1.735e-92
Identity = 159/227 (70.04%), Postives = 185/227 (81.50%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MREI+H+Q GQCGNQIGAKFWEVI  EHG+D  G Y G+ D Q+E+I+VYYNE SG R+VPRAVL+DLEPGTMDSVR+  +G++FRPDNFVFGQSGAGNNWAKGHYTEGAELI+S +D++RKE+E C+CLQGFQ+ H              ISKIREEYPDRMM T+SV PSPKVSDTVVEPYN TLS+HQLVE+ADE   +DNEALYDICF+TL    P + DLNH
Sbjct:    1 MREIVHVQVGQCGNQIGAKFWEVISHEHGVDTNGTYFGNKDNQIEKIDVYYNEVSGNRFVPRAVLVDLEPGTMDSVRASNYGRLFRPDNFVFGQSGAGNNWAKGHYTEGAELIESAMDIIRKESEQCECLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMCTYSVVPSPKVSDTVVEPYNCTLSIHQLVENADEVFCIDNEALYDICFRTLKLVTPSYGDLNH 227          
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB_EUGGR4.129e-9478.60Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]
TBB1_HOMAM5.393e-9472.73Tubulin beta-1 chain OS=Homarus americanus PE=2 SV... [more]
TBB8B_HUMAN1.201e-9373.57Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1[more]
TBB2_TRIVE1.201e-9371.37Tubulin beta-2 chain OS=Trichoderma virens PE=2 SV... [more]
TBB_PORPU1.569e-9371.68Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]
TBB_PORYE3.496e-9371.68Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 ... [more]
TBB2_EMENI5.963e-9370.48Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB2_TRIVI7.787e-9370.93Tubulin beta-2 chain OS=Trichoderma viride GN=tub2... [more]
TBB1_TRIVI1.017e-9270.74Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBBN_GUITH1.735e-9270.04Tubulin beta chain, nucleomorph OS=Guillardia thet... [more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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