FC929850
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 9.328e-46 Identity = 91/228 (39.91%), Postives = 136/228 (59.65%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE + I GQ G QIG WE+ C EHGI G+ D + + N +++E G++VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H + ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3) HSP 1 Score: 183.726 bits (465), Expect = 9.328e-46 Identity = 91/228 (39.91%), Postives = 136/228 (59.65%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE + I GQ G QIG WE+ C EHGI G+ D + + N +++E G++VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H + ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45 Identity = 91/228 (39.91%), Postives = 135/228 (59.21%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE + + GQ G Q+G WE+ C EHGI G+ D + + +++E G++VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+ID VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFSETGAGKHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45 Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE + + GQ G Q+G WE+ C EHGI G+ D + + ++ E G++VPRAV +DLEP +D +R+GP+ Q+F P+ + G+ A NN+A+GHYT G E+ID VLD +RK ++ C LQGF V H + ++ +Y + L FS++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45 Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE + + GQ G Q+G WE+ C EHGI G+ D + + ++ E G++VPRAV +DLEP +D +R+GP+ Q+F P+ + G+ A NN+A+GHYT G E+ID VLD +RK ++ C LQGF V H + ++ +Y + L FS++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45 Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE + + GQ G Q+G WE+ C EHGI G+ D + + ++ E G++VPRAV +DLEP +D +R+GP+ Q+F P+ + G+ A NN+A+GHYT G E+ID VLD +RK ++ C LQGF V H + ++ +Y + L FS++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45 Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE + + GQ G Q+G WE+ C EHGI G+ D + + ++ E G++VPRAV +DLEP +D +R+GP+ Q+F P+ + G+ A NN+A+GHYT G E+ID VLD +RK ++ C LQGF V H + ++ +Y + L FS++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2) HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45 Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE + + GQ G Q+G WE+ C EHGI G+ D + + ++ E G++VPRAV +DLEP +D +R+GP+ Q+F P+ + G+ A NN+A+GHYT G E+ID VLD +RK ++ C LQGF V H + ++ +Y + L FS++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45 Identity = 89/228 (39.04%), Postives = 136/228 (59.65%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE + + GQ G Q+G WE+ C EHGI G+ D + + N +++E G++VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+ID VLD +RK A+ C LQGF + H + ++ +Y + L F+++P+P++S VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 MRECISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.591e-45 Identity = 90/227 (39.65%), Postives = 140/227 (61.67%), Query Frame = 2 Query: 83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLER-INVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 MRE++ I GQ G QIG WE+ EHG+ G+ S DS + + + +++E S G+YVPR++ +DLEP +D VR+GP+ +F P+ + G+ A +N+A+GHYT G E ID V+D VR+ +NC+ LQGF V H + ++ +Y + L FSV+P+P ++ +VVEPYN+ L+ H +E +D ++DNEA+YDIC + L+ + P +LN Sbjct: 1 MREVVSIHVGQAGVQIGNACWELYTIEHGLSPDGRLSDDSPSKHDDGFSTFFSETSSGKYVPRSLYVDLEPNVIDEVRNGPYRSLFHPETMITGKEDAASNYARGHYTIGKEQIDVVMDKVRRLVDNCNGLQGFFVFHSFGGGTGSGFGALILERLSTDYGKKSKLEFSVYPAPTLASSVVEPYNSVLTTHTTLEHSDCSFMVDNEAIYDICKKNLNIAQPGLTNLN 227 The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 422
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bpback to top |