FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.328e-46
Identity = 91/228 (39.91%), Postives = 136/228 (59.65%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + I  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 9.328e-46
Identity = 91/228 (39.91%), Postives = 136/228 (59.65%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + I  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45
Identity = 91/228 (39.91%), Postives = 135/228 (59.21%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +    +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK A+ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFSETGAGKHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45
Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +    ++ E   G++VPRAV +DLEP  +D +R+GP+ Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45
Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +    ++ E   G++VPRAV +DLEP  +D +R+GP+ Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45
Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +    ++ E   G++VPRAV +DLEP  +D +R+GP+ Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45
Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +    ++ E   G++VPRAV +DLEP  +D +R+GP+ Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45
Identity = 90/228 (39.47%), Postives = 135/228 (59.21%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +    ++ E   G++VPRAV +DLEP  +D +R+GP+ Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.218e-45
Identity = 89/228 (39.04%), Postives = 136/228 (59.65%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +  N +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P++S  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.591e-45
Identity = 90/227 (39.65%), Postives = 140/227 (61.67%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLER-INVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE++ I  GQ G QIG   WE+   EHG+   G+ S DS  + +   + +++E S G+YVPR++ +DLEP  +D VR+GP+  +F P+  + G+  A +N+A+GHYT G E ID V+D VR+  +NC+ LQGF V H              + ++  +Y  +  L FSV+P+P ++ +VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L+ + P   +LN
Sbjct:    1 MREVVSIHVGQAGVQIGNACWELYTIEHGLSPDGRLSDDSPSKHDDGFSTFFSETSSGKYVPRSLYVDLEPNVIDEVRNGPYRSLFHPETMITGKEDAASNYARGHYTIGKEQIDVVMDKVRRLVDNCNGLQGFFVFHSFGGGTGSGFGALILERLSTDYGKKSKLEFSVYPAPTLASSVVEPYNSVLTTHTTLEHSDCSFMVDNEAIYDICKKNLNIAQPGLTNLN 227          
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBA3_BOVIN9.328e-4639.91Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ... [more]
TBA3C_HUMAN9.328e-4639.91Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
TBA_XENTR1.218e-4539.91Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA4A_RAT1.218e-4539.47Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE1.218e-4539.47Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA1.218e-4539.47Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN1.218e-4539.47Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN1.218e-4539.47Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA2_PATVU1.218e-4539.04Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBAA_SCHCO1.591e-4539.65Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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