FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.347e-44
Identity = 90/230 (39.13%), Postives = 134/230 (58.26%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MRE++ I  GQ G QIG   WE+   EHGI   G      D      E  + +++E   G+YVPRA+ +DLEP  +D VR+G +  +F P+  + G+  A NN+A+GHYT G E++D +LD VR+ ++ CD LQGF   H              + ++  +Y  +  L F+V+P+P+VS +VVEPYN  L+ H  +E AD   ++DNEA+YD+C + L  + P F  LN+
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSQEHGIRPDGYLQEGLDRPKGGEEGFSTFFSETGSGKYVPRALYVDLEPNVIDEVRTGVYKDLFHPEQLIAGKEDAANNYARGHYTVGREILDDILDRVRRMSDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSLDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCRRNLDIARPNFSSLNN 230          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.347e-44
Identity = 90/228 (39.47%), Postives = 137/228 (60.09%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE+L I  GQ G Q+G   WE+ C EHGI+  G    D + +   +  + +++E S G+ VPR V +DLE G +D V++G +  ++ P+  + G   A NN+A+GHYT G E+I+  LD +RK  ENC  LQGF + +              + ++  +Y  +  L F+V+PSP+VS  VVEPYN+ L+ H L+E  D  +VLDNEA+Y+IC ++L+   P + +LN
Sbjct:    1 MREVLSIHIGQAGIQVGNACWELYCLEHGINPDGSIIQDFNKKKNDDAFSTFFSETSTGKRVPRCVFLDLESGVIDEVKNGRYKNLYHPEQLICGNEDAANNYARGHYTIGKEIIEIALDRIRKLVENCSGLQGFLIFNSVGGGTGSGLGSLLLERLSLDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLATHSLLEHTDVAVVLDNEAIYEICQRSLNIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.759e-44
Identity = 85/212 (40.09%), Postives = 128/212 (60.38%), Query Frame = 2
Query:   86 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDIC 715
            REIL +  GQ GNQIG++FW  +C EHGI   G     +    +R +V++ +A    Y+PRAV++DLEP  +DS++SGP+  ++ P+NF +     GAGNNWAKG Y  G  + + V++++ +EAE  D L+GF + H              + ++ + YP +++ T+SVFP     D VV+PYN+ LS+ +L   AD  +VLDN AL  IC
Sbjct:    3 REILTVSAGQAGNQIGSEFWSQLCAEHGISKEGVLEDWATDMTDRKDVFFYQADDEHYIPRAVMIDLEPRVLDSIKSGPYKNLYNPENFFYDPQGGGAGNNWAKG-YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSIAGGTGSGLGSYLLERMNDRYPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKIC 213          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 91/232 (39.22%), Postives = 135/232 (58.19%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERIN------VYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G QIG   WE+ C EHGI   G +      Q  +IN       +++E   G++VPRAV++DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E ID VLD +RK  + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFG----TQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 91/232 (39.22%), Postives = 135/232 (58.19%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERIN------VYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G QIG   WE+ C EHGI   G +      Q  +IN       +++E   G++VPRAV++DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E ID VLD +RK  + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFG----TQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 87/220 (39.55%), Postives = 129/220 (58.64%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTG-----KYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTL 727
            MRE++ +  GQ G QI    WE+ C EHGI   G     + + D D   +  N +++E   G+YVPR +  DLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G E+ID  LD VR+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L
Sbjct:    1 MREVVSLNVGQAGGQIANSCWELYCLEHGIQPDGYLTEERKAADPD---QGFNTFFSETGQGKYVPRTIYCDLEPNVVDEVRTGPYRALFHPEQMITGKEDASNNYARGHYTVGKEMIDQCLDKVRRVADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNL 217          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 92/231 (39.83%), Postives = 134/231 (58.01%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTG-----KYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MREI+ +  GQ G QI    WE+ C EHGI   G     + + D D      + +++E   G+YVPR +  DLEP  +D VR+G +  +F P++ + G+  A NN+A+GHYT G ELID VLD VR+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E AD   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPD---HGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHADCSFMVDNEAIYDICRRNLGLERPNYENLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.919e-44
Identity = 94/233 (40.34%), Postives = 138/233 (59.23%), Query Frame = 2
Query:   86 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTG------KYSGDSDLQLERINVYYNEASGGR-YVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEY-PDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            REI+ I  GQ G Q+G   WE+ C EHGI+  G      K S D +   + +  +++E++ G+  VPRA+ +DLEP  +D +R+G +  +F P+  + G+  A NN+A+GHYT G ELID  +D +R+ A+ CD LQGF V H              + K+  +Y   +  L F V+PSP+VS +VVEPYN+ LS H L+E  D   +LDNEA+Y+IC  +L    P + +LN
Sbjct:    3 REIISIHIGQAGVQVGNSCWELYCLEHGIERDGSIPADRKQSSDVNNLNKDLGTFFSESTNGKKVVPRAIFLDLEPTVIDEIRTGDYKNLFHPEQLITGKEDAANNYARGHYTVGKELIDVCVDRIRRLADQCDGLQGFLVFHSVGGGTGSGFGSLLLQKLALDYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKNSLDIEKPTYTNLN 235          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.919e-44
Identity = 91/229 (39.74%), Postives = 132/229 (57.64%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE++ I  GQ G QIG   WE+   EHGI   G             E  + +++E   G++VPRA+ +DLEP  +D VR+G F ++F P+  + G+  A NN+A+GHYT G E++D V + +RK A+ CD LQGF   H              +  +  EY  +  L F+V+P+P++S +VVEPYN  L+ H  +E AD   ++DNEA+YDIC + L  S P F +LN
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKEDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGHYTVGREIVDEVEERIRKMADQCDGLQGFLFTHSLGGGTGSGLGSLLLENLSYEYGKKSKLEFAVYPAPQLSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDICKRNLGISRPSFSNLN 229          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.685e-44
Identity = 88/228 (38.60%), Postives = 132/228 (57.89%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +    ++ E   G++VPRA+ +DLEP  +D VR+G + Q+F P+  + G+    NN+A+GHYT G E+ID VLD +RK A+ C  LQGF   H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBA_CANAL1.347e-4439.13Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBAN_GUITH1.347e-4439.47Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBG_USTVI1.759e-4440.09Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]
TBA8_RAT2.298e-4439.22Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE2.298e-4439.22Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA_AJECA3.001e-4439.55Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA2_NEUCR3.001e-4439.83Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA_DICDI3.919e-4440.34Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA3_YEAST3.919e-4439.74Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA5_CHICK6.685e-4438.60Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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