FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 89/228 (39.04%), Postives = 134/228 (58.77%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE++ I  GQ G QI    WE+ C EHGI   G  + +   Q   +  + +++E   G++VPRA+  DLEP  +D VR+G +  +F P+  + G+  A NN+A+GHYT G ELID VLD +R+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MREVISINVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAQDPDQGFSTFFSETGNGKHVPRAIYCDLEPNVVDEVRTGAYRNLFHPEMMITGKEDASNNYARGHYTVGKELIDGVLDKIRRVADNCAGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGLERPNYENLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 87/228 (38.16%), Postives = 132/228 (57.89%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDL--QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G QIG   WE+ C EHGI   G +   +      +    +++E   G++VPRAV++DLEP  +D VR+G +  +F P+  + G+  A NN+A+GHYT G E ID VLD +RK  + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKIHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRHLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.140e-43
Identity = 92/232 (39.66%), Postives = 133/232 (57.33%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTG------KYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE++ +  GQ G QI    WE+ C EHGI   G      K + D D      + +++E   G+YVPR +  DLEP  +D VR+G +  +F P+  + G+  A NN+A+GHYT G ELID VLD VR  A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+V+ +VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAAEDDD----GFSTFFSETGNGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPELMITGKEDASNNYARGHYTVGKELIDQVLDKVRHVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKCKLEFCVYPAPQVATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPNYENLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.140e-43
Identity = 92/235 (39.15%), Postives = 137/235 (58.30%), Query Frame = 2
Query:   83 MREILHIQG-GQCGNQIGAKFWEVICDEHGIDHTG-------KYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLNH 760
            MRE++ +   GQ G QIG   WE+   EHGI   G       K  G      E  + ++NE   G++VPRAV +DLEP  +D VR+G + ++F P+  + G+  A NN+A+GHYT G EL+D +LD +RK ++ CD LQGF   H              + ++  +Y  +  L F+V+P+P+VS +VVEPYN  L+ H  +E AD   ++DNEA+Y++C + L  S P F +LN+
Sbjct:    1 MREVISVNAVGQAGCQIGNACWELYSLEHGIRPDGYLQEGLTKPKGGE----EGFSTFFNETGSGKFVPRAVYVDLEPNVIDEVRTGAYRELFHPEQLISGKEDAANNYARGHYTVGRELLDDILDRIRKISDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSIDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYEMCKKNLDISRPSFANLNN 231          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.489e-43
Identity = 86/226 (38.05%), Postives = 131/226 (57.96%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE + +  GQ G QIG   WE+ C EH I   G +S D     +    ++ E S  +YVPRA+++DLEP  +D VR+G +  +F P+  + G+  A NN+A+GHYT G + +D V D +RK A++C  LQGF + H              + ++  EY  +  L F+++P+P+ S  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MRECISVHIGQAGVQIGNACWELFCLEHSIQPDGTFS-DPPSSDDSFATFFRETSMSKYVPRAIMVDLEPTVVDEVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKDKVDMVSDRIRKLADSCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVEYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHTTLEHSDCVFMVDNEAIYDICHRNLDIERPTYTNLN 225          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 87/219 (39.73%), Postives = 129/219 (58.90%), Query Frame = 2
Query:  110 GQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            GQ G Q+G   WE+ C EHGI   G+   D       +  N +++E   G++VPRA+ +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+ID VLD  RK A+ C  LQGF + H              + ++  +Y  +  L F+V+P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    4 GQAGVQMGNACWELYCLEHGIQPDGQMPSDKTCGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGIYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDIVLDRTRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLN 222          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 7.391e-43
Identity = 80/208 (38.46%), Postives = 128/208 (61.54%), Query Frame = 2
Query:   86 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEAL 703
            REI+ IQ GQCGN +G++FW+ +C EHGI   G     +    +R +V++ ++   RY+PRA+L+DLEP  ++ ++SGP+  I+ P+NF  GQ   GAGNNW  G Y  G  + + V D++ +EA+  D L+GF   H              + ++ + +P +++ T+SVFP  + +D VV PYN+ L++ +L ++AD  +VLDN AL
Sbjct:    3 REIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGGDRKDVFFYQSDDTRYIPRAILLDLEPRVLNGIQSGPYKNIYNPENFFIGQQGIGAGNNWGAG-YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSIAGGTGSGLGSFLLERMNDRFPKKLIQTYSVFPDTQAADVVVNPYNSLLAMRRLTQNADSVVVLDNAAL 209          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 7.391e-43
Identity = 87/228 (38.16%), Postives = 133/228 (58.33%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MRE++ +  GQ G QI    WE+ C EHGI   G  + +   +      + +++E   G+YVPR +  DLEP  +D VR+G +  +F P+N + G+  A NN+A+GHYT G E+ID VLD VR+ A++C  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKKEDPDHGFSTFFSETGQGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPENLITGKEDASNNYARGHYTVGKEMIDQVLDKVRRMADSCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPSYENLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 90/231 (38.96%), Postives = 133/231 (57.58%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTG-----KYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            MREI+ +  GQ G QI    WE+ C EHGI   G     + + D D      + +++E   G+YVPR +  DLEP  +D VR+G +  +F P++ + G+  A NN+A+GHYT G ELID VLD VR+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPY+  L+ +  +E AD   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPD---HGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYHNFLTTNTTLEQADCSFMVDNEAIYDICRRNLGLERPNYENLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.809e-42
Identity = 84/217 (38.71%), Postives = 135/217 (62.21%), Query Frame = 2
Query:   86 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTL 727
            REI+++Q GQCGNQ+G++FW  +C EHGI   G+    + L  +R +V++ +A   +Y+PRA+L+DLEP  ++ +++     +F P+N    +   GAGNNWA G YT+G  + +++LD++ +EAE CD L+GF +CH              +  I + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L   AD  +VLDN AL  I  + L
Sbjct:    3 REIINLQVGQCGNQVGSEFWRKLCQEHGIAKDGRLEDFATLGGDRKDVFFYQADDEQYIPRAILLDLEPRVINGIQTSDLRNLFNPENIFISKEGGGAGNNWASG-YTQGEAVQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQSESSDVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERL 218          
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBA_GIBZE8.731e-4439.04Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA8_BOVIN8.731e-4438.16Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA_MYCGR1.140e-4339.66Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA_ASHGO1.140e-4339.15Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBA2_CHICK1.489e-4338.05Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_ONCKE4.333e-4339.73Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBG_EMENI7.391e-4338.46Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBA1_EMENI7.391e-4338.16Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA_SORMA1.647e-4238.96Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBG_CHLRE2.809e-4238.71Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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