FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.720e-37
Identity = 81/228 (35.53%), Postives = 133/228 (58.33%), Query Frame = 2
Query:   86 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            REI+ +Q GQCGNQIG +FW+ +C EHGI   G     +    +R +V++ +A    Y+PRA+L+DLEP  ++ +++G +  ++  +N        GAGNNWA G Y +G  + + ++D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  +AD  +VLDN AL  I  + L  + P F   N
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTN 229          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.720e-37
Identity = 74/182 (40.66%), Postives = 112/182 (61.54%), Query Frame = 2
Query:  215 ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            +  N +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK A+ C  LQGF V H              + ++  +Y  +  L FS++P+ +VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    8 DSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPARQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 189          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.553e-37
Identity = 79/210 (37.62%), Postives = 128/210 (60.95%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP-SPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEAL 703
            MRE++ +Q GQCGNQ+GA+FW+ +C EHGI   G      DL  +R +V++ +A    +VPRA+L+DLEP  +    S      F  ++        GAGNNW  G Y  G  + + V+D++++EAE CD L+ F + H              + +I+EE+P +++ T+S+FP + + SD VV+PYN+ L++H+L+E++D  +V+DN +L
Sbjct:    1 MREVVTLQVGQCGNQMGAEFWKTLCKEHGISMCGVLQDSRDLG-DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSL 203          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.640e-37
Identity = 81/228 (35.53%), Postives = 133/228 (58.33%), Query Frame = 2
Query:   86 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            REI+ +Q GQCGNQIG +FW+ +C EHGI   G     +    +R +V++ +A    Y+PRA+L+DLEP  ++ +++G +  ++  +N        GAGNNWA G Y +G  + + ++D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  +AD  +VLDN AL  I  + L  + P F   N
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTN 229          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.034e-36
Identity = 74/218 (33.94%), Postives = 131/218 (60.09%), Query Frame = 2
Query:   86 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP--SPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTL 727
            REI+ +Q GQCGNQIG +FW+ +C+EH ID  G    ++ L  +R ++++ +A    ++P A+L DLEP  ++S+++  +  ++ P+N    +   GAGNNW  G Y++G ++ + ++D++ +E +N D L+GF + H              +  + + Y  +M+ TFSVFP  + + SD VV+PYN+ L++ +L+   D  +V+DN +L  I  + L
Sbjct:    3 REIITLQCGQCGNQIGVEFWKQLCNEHNIDQEGILKNNNFLNEDRKDIFFYQADDEHFIPGALLFDLEPRVINSIQTSEYRNLYNPENMFISKEGGGAGNNWGCG-YSQGHKVEEEIIDMIDREVDNSDNLEGFILSHSIAGGTGSGMGSYLLELLNDNYSKKMIQTFSVFPLLTNESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERL 219          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.763e-36
Identity = 81/229 (35.37%), Postives = 133/229 (58.08%), Query Frame = 2
Query:   86 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVH-QLVEDADECMVLDNEALYDICFQTLSSP-PYFCDLN 757
            REI+ +Q GQCGNQIG +FW+ +C EHGI   G     +    +R +V++ +A    Y+PRA+L+DLEP  ++ +++  +  ++  +N        GAGNNWA G Y +G ++ + ++D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L+++ +L  +AD  +VLDN AL  I    L  P P F   N
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHYIPRALLLDLEPRVINGIQNSEYRNLYNHENVFVADHGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTN 230          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.130e-36
Identity = 80/231 (34.63%), Postives = 128/231 (55.41%), Query Frame = 2
Query:   83 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERI--------NVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS--SPPYF 745
            MRE++ I  GQ G Q+G K WE+ C EHGI   G    +S+ +   I        N ++ E   GR+VPRA+ +D EP  +D +++G +  ++ P++ + G+  A +N+AKG  T    L++  +D +RK  ENC  LQGF + +                K+ ++Y  +  L   ++PSPK+S  VVEPYNA L+ H +++  +   ++DNE++Y IC + L   SP YF
Sbjct:    1 MREVITINIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMVDNESIYKICQKQLGVHSPSYF 230          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.949e-35
Identity = 80/221 (36.20%), Postives = 124/221 (56.11%), Query Frame = 2
Query:   89 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTG--KYSGD-SDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSP 736
            EI+ IQ GQCGN +G  FW  +  EHGID  G  KY+ D + ++ +  N ++ + +  RYVPRA+++DLEP  +  V+S  F  +F P N        GAGN+W+ G Y  G +  D ++D++ +E ++ D  +GFQ+ H              +  + + Y    + T+SVFPS K S+ VV PYN  L++ +L EDAD  ++ DN AL ++  +T   P
Sbjct:    4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQSS-FNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPS-KQSEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDP 221          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.672e-35
Identity = 77/209 (36.84%), Postives = 122/209 (58.37%), Query Frame = 2
Query:   92 ILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP-FGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATLSVHQLVEDADECMVLDNEALY 706
            ++ +  GQCGNQ+   FW+ + DEHGI+  G+ + + D+  ++  ++Y +A    YVPRAVL+DLEP  ++ +   P F  +F  DN        GAGNNWA G Y +G E+ + ++D++ +EAEN + L G    H              + ++RE +P +++ T+SVF +   S D VV PYN  LS+ +L+E+ D  +VLDN AL+
Sbjct:    7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY-QADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALH 213          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.677e-34
Identity = 77/217 (35.48%), Postives = 127/217 (58.53%), Query Frame = 2
Query:   86 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTL 727
            REI+ +Q GQCGNQIG +FW  +  EHGI   G     +    +R +V++ +A    Y+PRA+L+DLEP  ++S++   F  ++ P+N        GAGNNWA G YT   E  + ++D++ +E +N D L+GF + H              + ++ + YP +++ T+SVFP+  + S  VV PYN+ L++ +L+ +AD  +V+DN +L+ I  + L
Sbjct:    3 REIITLQVGQCGNQIGTEFWGRLIAEHGIGPDGIVKEFATEGTDRKDVFFYQADDQHYIPRALLIDLEPRVINSLQESEFKNLWNPENVYIDSQGGGAGNNWAVG-YTHATEKYEHIMDMIDRE-DNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERL 217          
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBG2_ARATH2.720e-3735.53Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBA1_CHICK2.720e-3740.66Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBG_ENCCU3.553e-3737.62Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG1_ARATH4.640e-3735.53Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG_PLAFO1.034e-3633.94Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_ANEPH1.763e-3635.37Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBA1_ENTHI5.130e-3634.63Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBG_CANGA1.949e-3536.20Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBG_CAEEL5.672e-3536.84Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_RETFI3.677e-3435.48Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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